Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A23
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   3.9  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   5.1  
SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc...    25   6.8  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   6.8  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 99  ISKQYLKVVNDRFLVRITVKYS-VPVDNEFAVIVRLWFVLVSVEQKFVQNEDNQSKMQQS 275
           I+ + L+      L  + VK S +P+D ++    R   +L+   Q FVQ +   S +  +
Sbjct: 329 INSELLESTKLYSLFTLLVKLSDIPLDEKYDFSSRFSTLLLQF-QAFVQPKTMTSNVSTA 387

Query: 276 *RGTNVQTNTQ 308
             G N Q NT+
Sbjct: 388 PIGKNAQVNTE 398


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 19  FINYLHVTKKRNVTIIIILLLFKLQELSRNNI 114
           F NY+ +   RN T+   LLLF L   S  N+
Sbjct: 8   FSNYIDINFFRNATLDQCLLLFYLSLFSLTNL 39


>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +1

Query: 271 SRSGERTYKRTRKMGPPLITWAYSHRPTYKSSSRNYNKLSE 393
           S+ GE  YK+  K+   L    Y           NY K++E
Sbjct: 4   SKIGEDVYKKVDKVNAELFVLTYGSIVAQLCKDMNYEKVNE 44


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 376 YNKLSEINRTNRKCSTTTNKPIDNFRVLCIN 468
           YN++  ++ T+RK ++ +NK    F ++ IN
Sbjct: 42  YNQICSLSSTDRKKTSISNKLQQEFCIMDIN 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,831
Number of Sequences: 5004
Number of extensions: 38383
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)