Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A23
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    31   0.73 
01_01_0795 - 6187518-6188219                                           29   3.0  

>09_06_0244 +
           21822811-21823246,21823337-21823468,21823949-21824037,
           21824135-21824224,21825033-21825603,21826097-21826734,
           21826978-21827098,21827223-21827337,21828234-21829723,
           21829830-21829901,21830151-21830196,21830413-21830515,
           21830591-21830674,21831035-21831475,21831651-21831746,
           21831896-21832045,21832131-21832274,21832414-21832527,
           21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 292 TFVPRYDCCIFD*LSSFCTNFCSTDTKTNQSLTITANSLSTGT 164
           TF+PR   C  + +   C + C  D     S+  TANSL+  T
Sbjct: 702 TFIPRSSLCSRELMLQSCCHACPIDGYYRSSMGHTANSLTKNT 744


>01_01_0795 - 6187518-6188219
          Length = 233

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 306 ACSFVRSFPATTVAFLIDCLRFVRISVQRTPRRTKVSQSQRTHYPPALSI 157
           A SF  SF   T+ F+  CLR +R++ +R  R   + Q QR   PP   +
Sbjct: 38  AASFALSFFLITI-FI--CLRALRVARRRRDRPLVMEQEQRRPTPPRFGL 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,942,278
Number of Sequences: 37544
Number of extensions: 216091
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)