Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A23
         (520 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC...    30   1.6  
AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB...    30   1.6  
AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA...    30   1.6  
AY119616-1|AAM50270.1|  809|Drosophila melanogaster LD43174p pro...    29   5.0  
AE014297-2400|AAN13751.2|  809|Drosophila melanogaster CG7660-PB...    29   5.0  
AE014297-2399|AAF55458.2|  831|Drosophila melanogaster CG7660-PA...    29   5.0  

>AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC,
           isoform C protein.
          Length = 3604

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 352 TYKSSSRNYNKLSEINRTNRKCSTTTNKPIDNFRVLCINFTFALLVVQI 498
           T  S++ NY+  S  +  N   S++++  +D   ++CIN   A L+ +I
Sbjct: 82  TSNSNNNNYSNSSSSSSNNSSSSSSSSMIMDQRPIICINHLSASLISRI 130


>AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB,
           isoform B protein.
          Length = 3604

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 352 TYKSSSRNYNKLSEINRTNRKCSTTTNKPIDNFRVLCINFTFALLVVQI 498
           T  S++ NY+  S  +  N   S++++  +D   ++CIN   A L+ +I
Sbjct: 82  TSNSNNNNYSNSSSSSSNNSSSSSSSSMIMDQRPIICINHLSASLISRI 130


>AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA,
           isoform A protein.
          Length = 3604

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 352 TYKSSSRNYNKLSEINRTNRKCSTTTNKPIDNFRVLCINFTFALLVVQI 498
           T  S++ NY+  S  +  N   S++++  +D   ++CIN   A L+ +I
Sbjct: 82  TSNSNNNNYSNSSSSSSNNSSSSSSSSMIMDQRPIICINHLSASLISRI 130


>AY119616-1|AAM50270.1|  809|Drosophila melanogaster LD43174p
           protein.
          Length = 809

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 345 MAISPRDQGRTHFACSFVRSFPATTV--AFLIDCLRFVRISVQRTP 214
           +A+SP+   ++HFAC  +   P      AF + CL FVR+S+  +P
Sbjct: 345 VALSPQ---QSHFACMPIHVEPDDEFFSAFGVRCLNFVRLSLVPSP 387


>AE014297-2400|AAN13751.2|  809|Drosophila melanogaster CG7660-PB,
           isoform B protein.
          Length = 809

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 345 MAISPRDQGRTHFACSFVRSFPATTV--AFLIDCLRFVRISVQRTP 214
           +A+SP+   ++HFAC  +   P      AF + CL FVR+S+  +P
Sbjct: 345 VALSPQ---QSHFACMPIHVEPDDEFFSAFGVRCLNFVRLSLVPSP 387


>AE014297-2399|AAF55458.2|  831|Drosophila melanogaster CG7660-PA,
           isoform A protein.
          Length = 831

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 345 MAISPRDQGRTHFACSFVRSFPATTV--AFLIDCLRFVRISVQRTP 214
           +A+SP+   ++HFAC  +   P      AF + CL FVR+S+  +P
Sbjct: 345 VALSPQ---QSHFACMPIHVEPDDEFFSAFGVRCLNFVRLSLVPSP 387


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,810,963
Number of Sequences: 53049
Number of extensions: 404220
Number of successful extensions: 1103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)