Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A23
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93378-7|CAB07587.1|  605|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z93375-5|CAB07566.1|  605|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z93378-7|CAB07587.1|  605|Caenorhabditis elegans Hypothetical
           protein C38C6.6 protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 202 FGSSWCPLNRNSYKTKTINQKCNSRSGERTYKRTRKMGPP 321
           F   WC  +R     +         +GERTY+ T K+ PP
Sbjct: 385 FYCDWCKESRKLKLLENTEGNLCRATGERTYRLTVKLCPP 424


>Z93375-5|CAB07566.1|  605|Caenorhabditis elegans Hypothetical
           protein C38C6.6 protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 202 FGSSWCPLNRNSYKTKTINQKCNSRSGERTYKRTRKMGPP 321
           F   WC  +R     +         +GERTY+ T K+ PP
Sbjct: 385 FYCDWCKESRKLKLLENTEGNLCRATGERTYRLTVKLCPP 424


>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical protein
            R09H3.1 protein.
          Length = 1073

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 457  AHESYQSVCWWSLNTSYWYDLFHLIYYNFYLNSYTSADG 341
            +HES   + +W  N     DL  L+ ++ +LNS T ADG
Sbjct: 962  SHES--GLMYWQSNLYLHLDL--LVLFDMFLNSTTKADG 996


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 333 PRDQGRTHFACSFVRSFPATTVAFLIDCLRFVRISVQRTPRRTKVS 196
           P+    TH  C  VR      V F    L+FVR +++   ++ K S
Sbjct: 205 PKSDKNTHVNCVHVRKGDFQAVGFATADLKFVRSAIRFIEKKGKFS 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,916,117
Number of Sequences: 27780
Number of extensions: 216248
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)