Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A23
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    26   0.20 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.5  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   3.3  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   3.3  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   5.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.6  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = +1

Query: 229 RNSYKTKTINQKCNSRSGERTYKRT---RKMGPPLIT-----WAYSHRPTYKSSSRNYNK 384
           + SYK +   +K    S ER+  RT   R   P +I+     + YS+   Y ++  NYN 
Sbjct: 280 QKSYKNEREYRKYGETSKERSRDRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNN 339

Query: 385 LSEINRTNRK 414
            +     N K
Sbjct: 340 YNNNYNNNYK 349


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 433 KPIDNFRVLCINFTFALLV--VQIDYT 507
           K ID + V+C  F FA L+    ++YT
Sbjct: 302 KAIDIYLVMCFVFVFAALLEYAAVNYT 328


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = +3

Query: 243 NEDNQSKMQQS*RGTNVQTNTQNGSALDHVGL 338
           N +N +    +  G     N  NG    H GL
Sbjct: 247 NNNNNNGANDNGNGNGASNNNNNGDMFCHTGL 278



 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 233 IRTKRRQSIKNATVVAGNERTN 298
           + T +R S  N+T+ AGN  TN
Sbjct: 216 LETCQRNS-NNSTITAGNANTN 236


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 271 SRSGERTYKRTRKMGPP 321
           S SG+ TY +T KM  P
Sbjct: 50  SSSGDNTYTKTFKMNVP 66


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 271 SRSGERTYKRTRKMGPP 321
           S SG+ TY +T KM  P
Sbjct: 52  SSSGDNTYTKTFKMNVP 68


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 52  NVTIIIILLLFKLQELSRNNI 114
           N+TI+IIL++  +Q L   ++
Sbjct: 5   NLTIVIILIMCGVQNLRARSV 25


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 340 SHRPTYKSSSRNYNKLSEINRTNRK 414
           +HRPT+ + ++  +KL     T RK
Sbjct: 880 THRPTFANLTQTLDKLIRSPDTLRK 904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,426
Number of Sequences: 438
Number of extensions: 3144
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)