Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A22
         (276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    25   2.0  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    24   4.6  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    23   6.1  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    23   6.1  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    23   6.1  
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    23   8.0  

>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = -2

Query: 275 HVTT*YKILKTNFIHCLNRYCFNKCM*LLFFNATFFNIIC*IVIFLSPNNGNNYYYI 105
           H+ + + I+ + ++ C       + +   F +  FFNI+C I+  +  N  +  Y I
Sbjct: 456 HIESFFPIMSSPYVECEK---MERKISDAFQHGRFFNILCKIMFIIDNNRASREYPI 509


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 205 LLKQ*RFKQCIKLVFSILYYVVT 273
           LL +   K CI  +F +LYY+ T
Sbjct: 441 LLSRCEVKDCIHRLFMVLYYLNT 463


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 108 YYYSINVSLVCAFIYL 61
           Y YS+   LVC ++YL
Sbjct: 53  YKYSLESGLVCLYLYL 68


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 119 NYYYITTV*MFHLYVHLFTYII 54
           NY +I    M H+YVH+F  +I
Sbjct: 111 NYGFILN--MVHMYVHVFNILI 130


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 217 IALINVCNY--SFLTLLFST*FAKLLYFYLP 131
           ++ +++C    SFL  +FST F   LY  LP
Sbjct: 90  LSFLSICFLFISFLNFIFSTRFQNKLYRTLP 120


>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 257 KILKTNFIHCLNRYC 213
           K+L  NF++C N+ C
Sbjct: 2   KLLTANFLNCSNKKC 16


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,057
Number of Sequences: 5004
Number of extensions: 19057
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)