Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A21
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ...    27   4.1  
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    27   5.5  
Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...    27   7.2  
U80452-8|AAB37855.1|  244|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical
           protein F44E7.4d protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 208 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALV 345
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLL 369


>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
           protein F44E7.4c protein.
          Length = 1008

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 208 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALV 345
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+
Sbjct: 265 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLL 310


>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
           protein F44E7.4a protein.
          Length = 1067

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 208 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALV 345
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLL 369


>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
           protein F44E7.4b protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 208 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALV 345
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLL 369


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 67  DPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQ 189
           + EA A   R+ K +   ALL PDA  D  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 8   GRTNTFTVSPCQSH-ISQKHGTQRLKQNIHAVISWLSVKHYLVRTLKQMSLM 160
           G  +T   SP   +    +   QRLK+  +A + +L V++  V+ LK+M+++
Sbjct: 326 GEDSTDGASPVPDYETGDEKDDQRLKKLHYAAVEFLKVQNNYVQYLKEMAVL 377


>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 43  ESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLK 222
           +S + E+W+P AKA   ++ K    +      A   E    + +  +L+E+ KI  ++ K
Sbjct: 44  KSEEGESWEPAAKAAIKKAVKKYEAEVKKLEKAGCREKEAEEAQHAALEEAKKITFSLDK 103

Query: 223 A 225
           +
Sbjct: 104 S 104


>U80452-8|AAB37855.1|  244|Caenorhabditis elegans Hypothetical
           protein C16C8.13 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +2

Query: 5   EGRTNTFTVSPCQSHISQKHGTQRLKQN-----IHAVISWLSVKHYLVRTLKQMSLMLFR 169
           E + +  T+  CQ  + ++HG Q+ ++N      H ++   SVK       KQ    + +
Sbjct: 33  EDKLHKNTLEMCQKILKKQHGFQKTQENQNKFIEHLILDLESVKKETSDMKKQQETQILK 92

Query: 170 WRQCHYRSR*KYQSQ 214
            RQ  Y    K + Q
Sbjct: 93  -RQDEYHDEMKQEFQ 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,048,137
Number of Sequences: 27780
Number of extensions: 143772
Number of successful extensions: 395
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)