Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_A19
(360 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 186 1e-48
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 2e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 92 3e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 53 2e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 52 2e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 2e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 46 2e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 28 0.38
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.50
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 1.5
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 26 1.5
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 2.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 3.5
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 24 6.2
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 6.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 6.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 6.2
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 24 8.2
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 24 8.2
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 24 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 186 bits (452), Expect = 1e-48
Identities = 81/89 (91%), Positives = 86/89 (96%)
Frame = +3
Query: 93 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSK 272
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH +MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 273 RGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
RGILTLKYPIEHGIV +WDDMEKIWHHTF
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTF 90
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (253), Expect = 2e-24
Identities = 44/83 (53%), Positives = 61/83 (73%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSKRGILTL 290
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 291 KYPIEHGIVTDWDDMEKIWHHTF 359
+ PIE GI+ +W DME+IW + +
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIY 94
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 91.9 bits (218), Expect = 3e-20
Identities = 42/89 (47%), Positives = 63/89 (70%), Gaps = 2/89 (2%)
Frame = +3
Query: 99 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQDVMVGMGQKDSYVGDEAQSK 272
E A +V+DNG+G K G+A D+ PR FPSIVGRP R ++ + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 273 RGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
R +L +KYP+E+GI+ D+++M ++W +TF
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTF 90
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 52.8 bits (121), Expect = 2e-08
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSKRGILTL 290
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 291 -KYPIEHGIVTDWDDMEKIWHHTF 359
+ P E ++++WD ME++ +TF
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTF 106
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 52.4 bits (120), Expect = 2e-08
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 23/105 (21%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIV--------------GRPR--------HQDVMV 224
+++DNG+G K G+AG+DAP VFP+++ +P H
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 225 GMGQKDSYVGDEAQSKRGI-LTLKYPIEHGIVTDWDDMEKIWHHT 356
D ++G++A K +L YPI HG + +WD ME+ W +
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQS 112
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 46.0 bits (104), Expect = 2e-06
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSKR 275
EE+ +LV+D GS + G+AG+++P + PS G V + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG------VRSDVTGRNKYVVDELQIHA 61
Query: 276 GI--LTLKYPIEHGIVTDWDDMEKIW 347
I + +K +GI+ DW+ W
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTW 87
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 45.6 bits (103), Expect = 2e-06
Identities = 28/86 (32%), Positives = 45/86 (52%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSKR 275
+EV+A+V+D GS + GF+G+D P+ V PS G D G++ Y +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG--EFSDGRRLFGEEYIY-----KSNP 61
Query: 276 GILTLKYPIEHGIVTDWDDMEKIWHH 353
G + +K I +G V +WD +W +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRY 86
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 28.3 bits (60), Expect = 0.38
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 156 GDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSKRGILTLKYP 299
G+ PRA F ++ P H +++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.50
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 297 PIEHGIVTDWDDMEKIWHHTF 359
PI+ G V DW+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 1.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +3
Query: 123 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMG-----QKDSYVGDEAQSKR 275
N +GM + R F S VG + + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 1.5
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSKRGILTL 290
+V+DNG+ KAGFAG P+ + R + + + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKDGNRL--------FLGNELANCNDFTTL 57
Query: 291 KYPIEH--GIVTDWDDMEKIW 347
++ H G + W +W
Sbjct: 58 QFRRAHEKGYLVHWSTETAVW 78
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 2.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 103 LPRWS*TMGPECAKPVSRETTLPAPYFPRSW 195
L W T P+C P +RET + SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 3.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 216 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 302
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 24.2 bits (50), Expect = 6.2
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 226 PTMTSW*RGRPTIEGNTARGASSPAKPALHIPDPLSTT 113
PT ++ T EG A+ P P LHIP P TT
Sbjct: 20 PTYQAYFYINETFEG--AQPQWEPPIPGLHIPPPPGTT 55
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 6.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 143 FAHSGPIVYDQRGNFLV 93
+ HS PI+YD+ G+ +V
Sbjct: 162 YTHSQPILYDRDGSLIV 178
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 6.2
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = -3
Query: 253 PT*ESF*PM-PTMTSW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 92
PT S P+ PT+ P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 6.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 199 RPTIEGNTARGASSPAKPALHIPDPLSTTNAATS 98
RP+ +G A G A P+ IP PL +N +S
Sbjct: 950 RPSNDGRKASGPRPAAPPS--IPPPLPVSNILSS 981
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 8.2
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 311 AVFDGVFECEDTPLALCLI--TYVGVLLTHADH 219
+V D +FEC D P+ + +G+ H +H
Sbjct: 298 SVLDALFECFDVPVVQYMYQENIIGICNEHFEH 330
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 23.8 bits (49), Expect = 8.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 269 QEGYPHTQIPHRTRHRH 319
Q +PHT+ PH H H
Sbjct: 167 QHHHPHTRPPHHPPHPH 183
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 23.8 bits (49), Expect = 8.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 224 DHDVLVTRSPHDRGKYGAGSVVSRE 150
D D+ T P + YG GSV E
Sbjct: 384 DEDISATSIPKSQAAYGHGSVTYHE 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,119
Number of Sequences: 5004
Number of extensions: 27184
Number of successful extensions: 81
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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