Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_A19
(360 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 197 2e-51
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 197 2e-51
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 197 2e-51
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 197 2e-51
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 197 2e-51
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 197 2e-51
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 196 5e-51
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 194 2e-50
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 190 2e-49
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 182 9e-47
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 182 9e-47
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 180 2e-46
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 175 1e-44
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 158 9e-40
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 107 3e-24
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 104 2e-23
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 87 3e-18
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 66 5e-12
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 46 1e-05
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 46 1e-05
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 35 0.015
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 31 0.32
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 30 0.56
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 29 1.3
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 29 1.3
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 29 1.3
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 29 1.3
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 1.7
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 26 6.9
U64859-1|AAC69092.2| 468|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z68134-4|CAA92224.1| 567|Caenorhabditis elegans Hypothetical pr... 26 9.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 26 9.1
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 26 9.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 26 9.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 26 9.1
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 26 9.1
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 26 9.1
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 197 bits (480), Expect = 2e-51
Identities = 88/91 (96%), Positives = 90/91 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
SKRGILTLKYPIEHGIVT+WDDMEKIWHHTF
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 197 bits (480), Expect = 2e-51
Identities = 88/91 (96%), Positives = 90/91 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
SKRGILTLKYPIEHGIVT+WDDMEKIWHHTF
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 197 bits (480), Expect = 2e-51
Identities = 88/91 (96%), Positives = 90/91 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
SKRGILTLKYPIEHGIVT+WDDMEKIWHHTF
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 197 bits (480), Expect = 2e-51
Identities = 88/91 (96%), Positives = 90/91 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
SKRGILTLKYPIEHGIVT+WDDMEKIWHHTF
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 197 bits (480), Expect = 2e-51
Identities = 88/91 (96%), Positives = 90/91 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
SKRGILTLKYPIEHGIVT+WDDMEKIWHHTF
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 197 bits (480), Expect = 2e-51
Identities = 88/91 (96%), Positives = 90/91 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
SKRGILTLKYPIEHGIVT+WDDMEKIWHHTF
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 196 bits (477), Expect = 5e-51
Identities = 87/91 (95%), Positives = 90/91 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
SKRGILTLKYPIEHGIVT+WDDMEKIWHHTF
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 194 bits (473), Expect = 2e-50
Identities = 85/91 (93%), Positives = 90/91 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD++VAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
SKRGILTLKYPIEHGIVT+WDDMEKIWHHTF
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 190 bits (464), Expect = 2e-49
Identities = 85/89 (95%), Positives = 88/89 (98%)
Frame = +3
Query: 93 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSK 272
+EE+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 273 RGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
RGILTLKYPIEHGIVT+WDDMEKIWHHTF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 90
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 182 bits (442), Expect = 9e-47
Identities = 83/86 (96%), Positives = 85/86 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKI 344
SKRGILTLKYPIEHGIVT+WDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 182 bits (442), Expect = 9e-47
Identities = 83/86 (96%), Positives = 85/86 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKI 344
SKRGILTLKYPIEHGIVT+WDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 180 bits (439), Expect = 2e-46
Identities = 82/86 (95%), Positives = 85/86 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDMEKI 344
SKRGILTLKYPIEHGIVT+WDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 175 bits (425), Expect = 1e-44
Identities = 79/83 (95%), Positives = 82/83 (98%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQ 266
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 267 SKRGILTLKYPIEHGIVTDWDDM 335
SKRGILTLKYPIEHGIVT+WDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 158 bits (384), Expect = 9e-40
Identities = 70/73 (95%), Positives = 72/73 (98%)
Frame = +3
Query: 141 KAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 320
+AGFAGDDAPRAVFPSIVGRPRHQ VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 321 DWDDMEKIWHHTF 359
+WDDMEKIWHHTF
Sbjct: 65 NWDDMEKIWHHTF 77
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 107 bits (256), Expect = 3e-24
Identities = 46/47 (97%), Positives = 47/47 (100%)
Frame = +3
Query: 219 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT+WDDMEKIWHHTF
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 47
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 104 bits (250), Expect = 2e-23
Identities = 42/83 (50%), Positives = 61/83 (73%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSKRGILTL 290
+V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A+S RG+ ++
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70
Query: 291 KYPIEHGIVTDWDDMEKIWHHTF 359
+YP+EHGIV +W DMEKIW + F
Sbjct: 71 EYPMEHGIVNNWSDMEKIWEYIF 93
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 87.0 bits (206), Expect = 3e-18
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Frame = +3
Query: 111 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQDVMVGMGQKDSYVGDEAQSKRGIL 284
+VVDNG+G K G+AG + P +FPS+VGRP R + + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 285 TLKYPIEHGIVTDWDDMEKIWHHTF 359
+ YP+++GIV +WDDM +W HTF
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTF 93
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 66.5 bits (155), Expect = 5e-12
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Frame = +3
Query: 87 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV------------GRPRHQDVMVGM 230
M ++ A V+DNG+G K G+AG+ P+ + PS + + V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 231 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIVTDWDDMEKIW 347
D ++GDEA S T+KYPI HGIV DWD ME+ W
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYW 100
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 45.6 bits (103), Expect = 1e-05
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +3
Query: 102 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSKRGI 281
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 282 LTLKYPIEHGIVTDWDDMEKIWHHTF 359
++ PIE G V +WD ++IW TF
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 45.6 bits (103), Expect = 1e-05
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +3
Query: 102 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQDVMVGMGQKDSYVGDEAQSKRGI 281
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 282 LTLKYPIEHGIVTDWDDMEKIWHHTF 359
++ PIE G V +WD ++IW TF
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIWEKTF 82
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 35.1 bits (77), Expect = 0.015
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 17/105 (16%)
Frame = +3
Query: 96 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG--RPRHQDVMVGMGQKDSYVGDEAQS 269
+EV+ LV D GS + GFAG++ P+ PS + D + + + Q+
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQT 68
Query: 270 KR------GILTLKYP---------IEHGIVTDWDDMEKIWHHTF 359
KR G + P ++ G++ DW+ EKI H++
Sbjct: 69 KREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSY 113
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 30.7 bits (66), Expect = 0.32
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 232 PMPTMTSW*RGRPTIEGNTARGASSPAKPALHIPDPL 122
P T T RGRP I + ++ P P PDPL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 29.9 bits (64), Expect = 0.56
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 194 GATSSPGRHGRHGSEG 241
G + +PGRHGRHG+ G
Sbjct: 109 GPSGTPGRHGRHGAPG 124
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 205 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 95
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 641 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 675
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 205 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 95
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 205 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 95
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 205 RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSS 95
R P +E + +SSPA P++ P P +T++ +TSS
Sbjct: 642 RAHPEVEQPVS--SSSPATPSISGPPPCATSSGSTSS 676
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +2
Query: 194 GATSSPGRHGRHGSEGLLRR**G-TEQEGYPHTQIPH----RTRHRHRLGR 331
G PGRHGRHGS R G + G PH H H H GR
Sbjct: 358 GPPHCPGRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGR 408
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 232 PMPTMTSW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 92
P+PT T+ PT T G +P+ +P P +T + T ++
Sbjct: 492 PVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTT 538
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 206 SPGRHGRHGSEGLLRR**GTEQEGYPHTQIPHRTRHRHRL 325
+PG HG GS L ++Q+ H +PH +++ L
Sbjct: 373 TPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPHHQYNQNNL 412
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 206 SPGRHGRHGSEGLLRR**GTEQEGYPHTQIPHRTRHRHRL 325
+PG HG GS L ++Q+ H +PH +++ L
Sbjct: 373 TPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPHHQYNQNNL 412
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 195 GRPRHQDVMVGMGQKDSYVGD----EAQSKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
G PRH+ + G+ ++++V + EA + + K HG WD++ K + TF
Sbjct: 629 GIPRHE-ISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITKSEYGTF 686
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +3
Query: 195 GRPRHQDVMVGMGQKDSYVGD----EAQSKRGILTLKYPIEHGIVTDWDDMEKIWHHTF 359
G PRH+ + G+ ++++V + EA + + K HG WD++ K + TF
Sbjct: 629 GIPRHE-ISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITKSEYGTF 686
>U64859-1|AAC69092.2| 468|Caenorhabditis elegans Hypothetical
protein R09F10.3 protein.
Length = 468
Score = 26.2 bits (55), Expect = 6.9
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = -3
Query: 343 IFSISSQSVTMPCSMGYLSVRIPLLLCASSPT*ESF*PMPTMTSW*RGRPTIEGNTARGA 164
I + SS+ VT P S ++ V+ +P+ + P P G P E TA A
Sbjct: 16 IATSSSEPVTSPSSASHVPVQTAPA-SHGAPSSVASQP-PASVDGKAGAPD-EARTASSA 72
Query: 163 SSPAKPALH--IPDPLSTTNAATSSS 92
S+P + + H DP +TT AAT+S+
Sbjct: 73 SNP-QGSEHPGSVDPAATTTAATTSA 97
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 202 GRPTIEGNTARGASSPAKPALHIP 131
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>Z68134-4|CAA92224.1| 567|Caenorhabditis elegans Hypothetical
protein T27A8.5 protein.
Length = 567
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = -2
Query: 308 VFDGVFECEDTPLALCLITYVGVLLTHADHDV 213
+ +G+ EC DTP + + +T +H +
Sbjct: 142 ILEGIVECSDTPSTALWNALIPMFMTDIEHHI 173
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 202 GRPTIEGNTARGASSPAKPALHIP 131
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 310 PCSMGYLSVRIPLLLCASSPT*ESF*PMPTMTS 212
P + G S P + +S+PT +S P TMTS
Sbjct: 516 PSTTGATSTASPSTITSSAPTSQSHSPSSTMTS 548
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 202 GRPTIEGNTARGASSPAKPALHIP 131
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 202 GRPTIEGNTARGASSPAKPALHIP 131
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 113 QRGNFLVAHCELVF 72
Q G F+V HCE+V+
Sbjct: 645 QNGEFMVTHCEIVY 658
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 113 QRGNFLVAHCELVF 72
Q G F+V HCE+V+
Sbjct: 645 QNGEFMVTHCEIVY 658
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,069,811
Number of Sequences: 27780
Number of extensions: 163921
Number of successful extensions: 645
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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