Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A18
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   2.9  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    24   6.7  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    24   6.7  
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    24   8.8  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    24   8.8  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    24   8.8  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 240 VNVDRRLQNRVILELAWKTV-ALMQKNKIIQQKINALQKETSEF 368
           V + R+L    IL  A + + +L  KNK + ++   LQK  SE+
Sbjct: 473 VPLSRKLNKATILSKATEYIKSLQSKNKKLIEENKILQKRLSEY 516


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 162 RIQRLQHIASPPTIDNPVIAPCPPAIVNVDRRLQNRVILELAWKTVAL 305
           R+ R + IA+  +IDN     C  A +N     +N+V+  L+   +AL
Sbjct: 147 RMYRSEDIAAS-SIDNSTPLACMIATLNNGHTFKNKVVKALSGTALAL 193


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 101 AHVVNHFVSLNTND 60
           +HV  HFV+L+TN+
Sbjct: 242 SHVAKHFVALSTNE 255


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 213 VIAPCPPAIVNVDRRLQNRVILELAWKTV----ALMQKNKIIQQ 332
           V+A C   IVN +RR + +V++  + K +     +MQK+  I +
Sbjct: 6   VLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDE 49


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 123 LSFLFFSRTCC*PLCF 76
           +SFLFFS   C PL F
Sbjct: 6   ISFLFFSVALCQPLLF 21


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 213 VIAPCPPAIVNVDRRLQNRVILELAWKTV----ALMQKNKIIQQ 332
           V+A C   IVN +RR + +V++  + K +     +MQK+  I +
Sbjct: 6   VLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDE 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,629
Number of Sequences: 5004
Number of extensions: 29173
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)