Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A18
         (371 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0108 + 14657020-14657193,14659040-14659355,14659728-146598...    29   1.5  
06_03_1255 + 28780181-28781172,28782065-28782932                       28   2.7  
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355...    28   2.7  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    27   3.6  
08_01_0011 - 81673-81724,81826-82161,82426-82556,82629-82729,828...    27   6.2  
06_02_0356 - 15118498-15119217,15120020-15120238,15120320-15120634     26   8.2  

>09_04_0108 +
           14657020-14657193,14659040-14659355,14659728-14659887,
           14661265-14661725,14663778-14663856,14664732-14664882,
           14665414-14665467,14665724-14665888
          Length = 519

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 144 RLREARRIQRLQHIASPPTIDNPVIAP 224
           RLR ARR   ++ +ASPPT+  P   P
Sbjct: 31  RLRRARRFA-VRSVASPPTVPKPAAPP 56


>06_03_1255 + 28780181-28781172,28782065-28782932
          Length = 619

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 141 VRLREARRIQRLQHIASPPTIDNPVIAPCPPAIVNVDRRLQNRVILELAWKTVALMQKNK 320
           V  R A   +RL+    PPT +   +A  PP      R   +  + E+A KT  L++  K
Sbjct: 32  VAKRRAMEAERLRRATKPPTTNAVAVAAPPPP----PRSTSSPAVGEVAVKTSLLVKATK 87

Query: 321 I 323
           +
Sbjct: 88  L 88


>01_06_1822 -
           40132919-40133208,40134313-40134398,40135067-40135566,
           40135708-40135905
          Length = 357

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 186 LYVVISEYALLHANEPCGNLSLSFLFFSRT 97
           L V I + + L+  +PC +LSL FLF + T
Sbjct: 308 LRVAIIQASYLYRLDPCTSLSLPFLFLNST 337


>12_02_1035 -
           25570009-25571241,25571940-25573709,25573797-25575118,
           25575208-25575555,25576540-25576633
          Length = 1588

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 279 ELAWKTVALMQKNKIIQQKINALQKETSEFI 371
           EL  K VAL +  K +  KIN  Q E S FI
Sbjct: 493 ELREKKVALEESCKHLNSKINGFQSERSMFI 523


>08_01_0011 -
           81673-81724,81826-82161,82426-82556,82629-82729,
           82849-82931,83154-83253,83366-83513,83664-83723,
           84272-84345,84482-84554,84648-84699,84764-84897,
           85096-85288,85386-85453
          Length = 534

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +3

Query: 150 REARRIQRLQHIASPPTID---NPVIAPCPPAIVNVDRRLQNRVILELAWKTVALMQKNK 320
           RE RR   L+  +S   I    + +  PCP   +   R++      E++W+ +  +Q + 
Sbjct: 339 RELRRFSDLRSASSALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSV 398

Query: 321 IIQQKI-NALQKETSEFI 371
           +    + +A  ++ +EF+
Sbjct: 399 VPGDLVKSACPEKITEFL 416


>06_02_0356 - 15118498-15119217,15120020-15120238,15120320-15120634
          Length = 417

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 189 SPPTIDNPVIAPCPPAIVNVDRRLQ 263
           SPPT  +P +   PP +   D  LQ
Sbjct: 231 SPPTRPHPTVVSLPPTVEERDEHLQ 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,536,648
Number of Sequences: 37544
Number of extensions: 187727
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)