Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A18
         (371 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119655-1|AAM50309.1|  264|Drosophila melanogaster RH68619p pro...    41   6e-04
AY061829-1|AAL27640.1|  264|Drosophila melanogaster HL03650p pro...    41   6e-04
AE014297-3921|AAF56571.2|  264|Drosophila melanogaster CG31324-P...    41   6e-04
X62636-1|CAA44502.1|  326|Drosophila melanogaster hrp36.1 protein.     27   7.9  
X59691-1|CAA42212.1|  386|Drosophila melanogaster P11 (hnRNP pro...    27   7.9  
X58183-1|CAA41170.1|  386|Drosophila melanogaster heterogeneous ...    27   7.9  
X54803-1|CAA38574.1|  386|Drosophila melanogaster Hrb87F protein.      27   7.9  
BT012315-1|AAS77440.1|  385|Drosophila melanogaster LD32727p pro...    27   7.9  
AE014297-1716|AAF54967.1|  385|Drosophila melanogaster CG12749-P...    27   7.9  
AE014297-1715|AAN13574.1|  325|Drosophila melanogaster CG12749-P...    27   7.9  

>AY119655-1|AAM50309.1|  264|Drosophila melanogaster RH68619p
           protein.
          Length = 264

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 17/33 (51%), Positives = 27/33 (81%)
 Frame = +3

Query: 273 ILELAWKTVALMQKNKIIQQKINALQKETSEFI 371
           +L +A KT+ L+Q+NK++Q+++  LQ ETSEFI
Sbjct: 201 LLSIAIKTIKLVQRNKLLQKRLAQLQLETSEFI 233


>AY061829-1|AAL27640.1|  264|Drosophila melanogaster HL03650p
           protein.
          Length = 264

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 17/33 (51%), Positives = 27/33 (81%)
 Frame = +3

Query: 273 ILELAWKTVALMQKNKIIQQKINALQKETSEFI 371
           +L +A KT+ L+Q+NK++Q+++  LQ ETSEFI
Sbjct: 201 LLSIAIKTIKLVQRNKLLQKRLAQLQLETSEFI 233


>AE014297-3921|AAF56571.2|  264|Drosophila melanogaster CG31324-PA
           protein.
          Length = 264

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 17/33 (51%), Positives = 27/33 (81%)
 Frame = +3

Query: 273 ILELAWKTVALMQKNKIIQQKINALQKETSEFI 371
           +L +A KT+ L+Q+NK++Q+++  LQ ETSEFI
Sbjct: 201 LLSIAIKTIKLVQRNKLLQKRLAQLQLETSEFI 233


>X62636-1|CAA44502.1|  326|Drosophila melanogaster hrp36.1 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 230 GTWSNNGVINGGWRG 186
           G W+N G  NGGW G
Sbjct: 274 GPWNNQGGGNGGWNG 288


>X59691-1|CAA42212.1|  386|Drosophila melanogaster P11 (hnRNP
           protein) protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 230 GTWSNNGVINGGWRG 186
           G W+N G  NGGW G
Sbjct: 274 GPWNNQGGGNGGWNG 288


>X58183-1|CAA41170.1|  386|Drosophila melanogaster heterogeneous
           nuclear ribonucleoproteinprotein.
          Length = 386

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 230 GTWSNNGVINGGWRG 186
           G W+N G  NGGW G
Sbjct: 274 GPWNNQGGGNGGWNG 288


>X54803-1|CAA38574.1|  386|Drosophila melanogaster Hrb87F protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 230 GTWSNNGVINGGWRG 186
           G W+N G  NGGW G
Sbjct: 274 GPWNNQGGGNGGWNG 288


>BT012315-1|AAS77440.1|  385|Drosophila melanogaster LD32727p
           protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 230 GTWSNNGVINGGWRG 186
           G W+N G  NGGW G
Sbjct: 274 GPWNNQGGGNGGWNG 288


>AE014297-1716|AAF54967.1|  385|Drosophila melanogaster CG12749-PA,
           isoform A protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 230 GTWSNNGVINGGWRG 186
           G W+N G  NGGW G
Sbjct: 274 GPWNNQGGGNGGWNG 288


>AE014297-1715|AAN13574.1|  325|Drosophila melanogaster CG12749-PB,
           isoform B protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 230 GTWSNNGVINGGWRG 186
           G W+N G  NGGW G
Sbjct: 274 GPWNNQGGGNGGWNG 288


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,810,376
Number of Sequences: 53049
Number of extensions: 318101
Number of successful extensions: 1085
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 984962268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)