Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A18
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.2  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   2.7  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   3.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   8.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   8.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   8.2  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 254 KTPKQSHLRTGMENCRSNAKKQNYTAKN*R 343
           K  + S + TGM N  +     NY++KN R
Sbjct: 183 KMSRGSSVVTGMNNIETYIVNTNYSSKNMR 212


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 256 LLSTFT-IAGGHGAITGLSMVGGEAIC 179
           LL+ F+ + GG G   G   +GG   C
Sbjct: 11  LLAVFSMLVGGFGGFGGFGGLGGRGKC 37


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 256 LLSTFT-IAGGHGAITGLSMVGGEAIC 179
           LL+ F+ + GG G   G   +GG   C
Sbjct: 11  LLAIFSMLVGGFGGFGGFGGLGGRGKC 37


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 272 DSVLESSIDVYNRRGTWSNN 213
           + VL S+ DVY  + T SNN
Sbjct: 368 NDVLLSNNDVYLYQNTMSNN 387


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 272 DSVLESSIDVYNRRGTWSNN 213
           + VL S+ DVY  + T SNN
Sbjct: 406 NDVLLSNNDVYLYQNTMSNN 425


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 254 KTPKQSHLRTGMENCRSNAKKQNYTAK 334
           K  + S + TGM N  +     NY++K
Sbjct: 183 KMSRGSSVVTGMNNIETYIVNTNYSSK 209


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 97 MLLTTLFHLTQTITNKIYYNXKDLIPVDD 11
          +LLT L H ++    K+ Y  K+   +D+
Sbjct: 10 VLLTFLLHPSRCTQGKVNYREKEKEVLDN 38


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 97 MLLTTLFHLTQTITNKIYYNXKDLIPVDD 11
          +LLT L H ++    K+ Y  K+   +D+
Sbjct: 10 VLLTFLLHPSRCTQGKVNYREKEKEVLDN 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,579
Number of Sequences: 438
Number of extensions: 2291
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)