Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A16
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0499 - 34354040-34354528                                         27   4.0  
05_03_0320 + 12353416-12353451,12353579-12353668,12353940-123540...    27   5.3  
09_01_0025 - 441528-444284                                             27   7.0  
04_01_0114 + 1196580-1196585,1196972-1197063,1197761-1197858,119...    27   7.0  

>03_06_0499 - 34354040-34354528
          Length = 162

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 160 CQCVIVRP*GCMYHKALSEYQRCSASDCRPATSCWD 267
           CQC+  RP GC  H A     + S S   P   C D
Sbjct: 114 CQCMDARPAGC--HPACKSCVKSSLSVSPPVYQCMD 147


>05_03_0320 +
           12353416-12353451,12353579-12353668,12353940-12354026,
           12354156-12354224,12355179-12355313,12355746-12355826,
           12355908-12355979,12356071-12356131,12356234-12356336,
           12356448-12356543,12356620-12356666,12356747-12356871,
           12356962-12357036
          Length = 358

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 292 KSVAWCRKGPSMKLQACNRKHYSADIL 212
           K +AWC       L   +RKHYS D++
Sbjct: 248 KMLAWCIAIAQSLLIIASRKHYSVDVV 274


>09_01_0025 - 441528-444284
          Length = 918

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 232 ASDCRPATSCWDLFDTMQHFF*LCVVL*DNANMCC 336
           A D     +CW      +H    C+VL DNA++CC
Sbjct: 259 AFDAAVVHACWS-----KHLHSDCLVLLDNAHLCC 288


>04_01_0114 +
           1196580-1196585,1196972-1197063,1197761-1197858,
           1198202-1198357,1202816-1203429,1203541-1203611,
           1203707-1203952,1204359-1204485,1204993-1205185,
           1205553-1206109
          Length = 719

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 277 CRKGPSMKLQACNRK 233
           C+ GPS K ++CNRK
Sbjct: 142 CQVGPSFKAKSCNRK 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,438,814
Number of Sequences: 37544
Number of extensions: 139035
Number of successful extensions: 323
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)