Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A16
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical pr...    30   0.50 
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    28   2.0  

>Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical
           protein C04B4.1 protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 240 LQACNFMLGPFRHHATLFLTLCCII 314
           L AC F+LG FR + T+ L  C II
Sbjct: 168 LVACQFLLGTFRGNITISLPFCSII 192


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 227 VVLPIAGLQLHAGTFSTPCNTFFNFVLYYKIMLICVVYMPHKFPLSSNIFLSTK 388
           V  P AG ++ +G F   CN   N ++   + +I  V MPH F L S +  S +
Sbjct: 308 VSAPDAG-KMFSGMFVPWCNGCDNNMVMQGVAIIGAVIMPHNFYLHSALVKSRR 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,790,753
Number of Sequences: 27780
Number of extensions: 140563
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)