Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A16
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   2.2  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   5.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   8.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   8.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 37  KEIFIVLYLYSAYLLQHFC 93
           KE+FI +  + +YL+  FC
Sbjct: 415 KELFIAIVCFVSYLIGLFC 433


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 37  KEIFIVLYLYSAYLLQHFC 93
           KE+FI +  + +YL+  FC
Sbjct: 468 KELFIAIVCFVSYLIGLFC 486


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 339 ICRINFLFLQIYFFLQS 389
           +C I  LFL +Y++L S
Sbjct: 8   LCGIAVLFLALYYYLTS 24


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 190 CMYHKALSEYQRCSA 234
           C++HK L +  +C+A
Sbjct: 22  CLHHKILIKKNKCNA 36


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 83  CNKYALYKYNTINISFKITCSL 18
           C +  +YK  TI  ++ + C L
Sbjct: 527 CGQLDVYKVETIGDAYCVACGL 548


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 203 RPCQNISAVVLPIAGLQLH 259
           RP +N S  +  + GL LH
Sbjct: 22  RPAENSSQPLAVVFGLSLH 40


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 171 DSPAVRVYVPQGPVRIS 221
           D P+  VYVP+G  +++
Sbjct: 13  DRPSEPVYVPKGDNKVA 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,937
Number of Sequences: 438
Number of extensions: 1542
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)