Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_A14
(448 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 134 2e-32
Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z75525-3|CAA99762.3| 245|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical p... 27 6.2
Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical p... 27 6.2
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 27 6.2
Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical p... 27 6.2
AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical ... 27 6.2
AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical ... 27 6.2
AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical ... 27 6.2
Z93389-2|CAB07671.2| 355|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z68749-4|CAA92959.2| 179|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical ... 27 8.2
AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine re... 27 8.2
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 134 bits (325), Expect = 2e-32
Identities = 68/123 (55%), Positives = 82/123 (66%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 213
M +PK + IYEYLF EGV VAKKD++A HP++E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 214 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 393
AWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P A DR
Sbjct: 61 AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119
Query: 394 AYR 402
AYR
Sbjct: 120 AYR 122
>Z50863-3|CAA90735.1| 830|Caenorhabditis elegans Hypothetical
protein C14H10.3 protein.
Length = 830
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 135 IWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQPTFH 13
+W F C+ V +S + +L+ R F+ QH+ +P H
Sbjct: 10 LWAFACLSVSISRRSEKGKCMLVPRERRHFFVQHVSRPHIH 50
>Z75525-3|CAA99762.3| 245|Caenorhabditis elegans Hypothetical
protein C03D6.5 protein.
Length = 245
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +1
Query: 124 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 303
+HPD+ KIP ++ L Y ++F + W++ NE + + + P + +
Sbjct: 78 EHPDISKIPVEDIVGVSVLLLRCKYNDQEFI--NMGWFVANEYTDE-ELKENPPAKPLIE 134
Query: 304 TLKRSVRTETVR 339
L R + TE +R
Sbjct: 135 KLSRKIETEDLR 146
>Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical
protein W04D2.1b protein.
Length = 894
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 350 LAGLMLQHEQLKIDQLIGAHQQLE 421
LA L++ HE +I++L+ AH Q +
Sbjct: 537 LADLVIVHEMREIEELVNAHDQFK 560
>Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical
protein W04D2.1a protein.
Length = 920
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 350 LAGLMLQHEQLKIDQLIGAHQQLE 421
LA L++ HE +I++L+ AH Q +
Sbjct: 563 LADLVIVHEMREIEELVNAHDQFK 586
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 534 WSDGCRHCFCENKQEFCSLISCPTKPS 560
>Z71178-18|CAH04640.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>Z71178-17|CAD44089.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 534 WSDGCRHCFCENKQEFCSLISCPTKPS 560
>Z71178-14|CAA94886.3| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-4|CAJ26240.1| 671|Caenorhabditis elegans Hypothetical
protein B0024.14e protein.
Length = 671
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-3|CAF32233.1| 898|Caenorhabditis elegans Hypothetical
protein B0024.14d protein.
Length = 898
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>AL021478-1|CAC35857.2| 894|Caenorhabditis elegans Hypothetical
protein B0024.14a protein.
Length = 894
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 WKVGCPRC*CQNKTVFLSMSTSSRRES 94
W GC C C+NK F S+ + + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494
>Z93389-2|CAB07671.2| 355|Caenorhabditis elegans Hypothetical
protein T13F3.3 protein.
Length = 355
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 293 ISGGKCRKILRYSIPSFVKYQ*KCLHANCSLTYPLDLSDC 174
+S G C R S+ S +KYQ K C + Y LD C
Sbjct: 28 LSCGACASFFRRSVVSKIKYQCKDGKKRCQIRY-LDRHFC 66
>Z68749-4|CAA92959.2| 179|Caenorhabditis elegans Hypothetical
protein F56H11.2 protein.
Length = 179
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 144 LLEIWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQP 22
L+ + +FG ++ F++Y+ S + +DR TV H+ P
Sbjct: 65 LVGVMIFGAVINFVNYYKSKKRQKELDRMTVESLLAHMALP 105
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
protein ZK512.3 protein.
Length = 1418
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 206 SLTYPLDLSDCIALITWRLGIFSRSG 129
S YPL L+DC LIT +L + S SG
Sbjct: 293 SQLYPLGLADCYTLIT-KLLVSSNSG 317
>AF022976-9|AAC69088.2| 404|Caenorhabditis elegans Hypothetical
protein R11G11.14 protein.
Length = 404
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 61 KHGFVLASTSWTTNFP 14
+HG + AST WT N P
Sbjct: 79 QHGLLCASTDWTMNLP 94
>AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine
receptor, class i protein77 protein.
Length = 324
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 148 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 318
P +QV+ + + ++ E F W+ T+ I + +F+ PP +I+ LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,779,447
Number of Sequences: 27780
Number of extensions: 193166
Number of successful extensions: 581
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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