Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A13
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    28   0.60 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   0.80 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   3.2  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   5.6  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.8  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    24   9.8  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    24   9.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    24   9.8  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    24   9.8  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    24   9.8  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    24   9.8  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    24   9.8  

>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 27.9 bits (59), Expect = 0.60
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 392 SVTKNVTEPINYKLNPIIEENNFLRKQSIRTGDEN 288
           +    ++E +++ + PI+ EN+ L  Q IR GD +
Sbjct: 124 NAANTISELLHFGVVPIVNENDTLSVQEIRFGDND 158


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 11/53 (20%), Positives = 21/53 (39%)
 Frame = +2

Query: 215  FQFPISSISKKNTRLXXXXXXXXXXXXXXXXYFVF*GNYFPLLLDSIYNLSVL 373
            F+ P+  IS ++  +                +    G Y P+L+DS+Y    +
Sbjct: 1858 FELPLQVISSQSQNISQLLNVYDFISSHSDIFIEHRGRYVPILIDSLYKFGAI 1910


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 148 CFYFVYMLNCSFFVNFVNYPKIW 80
           CFY  Y    S+F N  N+ +IW
Sbjct: 319 CFYKSYYEYRSWFHNVTNFSRIW 341


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 380 NVTEPINYKLNPIIEENNFLRKQSIRTGDE 291
           NVT+   Y  NP   +++F + +  RTGDE
Sbjct: 362 NVTK--GYLNNPAANKSSFTKDRFFRTGDE 389


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 17/67 (25%), Positives = 25/67 (37%)
 Frame = -3

Query: 392 SVTKNVTEPINYKLNPIIEENNFLRKQSIRTGDEN*IARXXXXXXXXXXXXXXXKLEIEK 213
           S+ +N +E ++   N  +  N       I T  E    R               KL +EK
Sbjct: 177 SLPENSSEQVSSSFNSRVAHNRNFSDGPIVTNLETDQPRIEKKLTIDSSRSAKKKLSVEK 236

Query: 212 QRRFYGN 192
           +RRF  N
Sbjct: 237 ERRFSDN 243


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 268 KKKQPGVLLRNRRNWKLKNSAVFMATVIKRQ 176
           KK  P    +NR NW+LK   +  A  +K+Q
Sbjct: 399 KKTYPQTKKKNR-NWRLKTIGMQKAEDVKKQ 428


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 283 SLEKRKKKQPGVLLRNRRNWKLKNSAVF 200
           +LEK       +L+RNR++W  K + VF
Sbjct: 377 ALEKNPNAFSMLLMRNRQDWAGKVTLVF 404


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 250 VLLRNRRNWKLKNSAVFMATVIKRQMLT 167
           +L R   +W  KNS VF +  I  Q L+
Sbjct: 352 MLPRATSSWSTKNSLVFSSNPISNQRLS 379


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 304 ELEMKIKSLEKRKKKQPGVLLRNR 233
           E++++IK L++RK +    + +NR
Sbjct: 170 EMQLRIKHLDRRKSENVSEIKKNR 193


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 322 LENKVSELEMKIKSLEKRK 266
           L+ ++SELEM +K  E  K
Sbjct: 353 LKRRISELEMAVKEYESEK 371


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 191 SYKAANADASPYYH 150
           SY++ N+  SPYYH
Sbjct: 469 SYESNNSSFSPYYH 482


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 395 QSVTKNVTEPINYKLNPIIEENNFLRKQSIRT 300
           ++V  + ++  NYKLN +I  +N +    + T
Sbjct: 351 ENVPLSASKEFNYKLNALISWSNVMESIQVET 382


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -1

Query: 328 ISLENKVSELEMKIKSLEKRKKKQPGVLLRNRRNW---KLKNSAVFMATV 188
           +S + K  E E  IKS  +   K+  V+ + +RN    +LK   ++  T+
Sbjct: 394 LSKDGKPFENEFNIKSFNRNLVKRAAVMAKLQRNQLEEELKAKGIYKPTI 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,074,591
Number of Sequences: 5004
Number of extensions: 13797
Number of successful extensions: 55
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)