Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_A13
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794 31 0.25
01_01_0674 + 5162291-5162376,5162530-5162560,5162689-5163207,516... 29 1.0
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349... 29 1.8
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 29 1.8
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371... 28 3.1
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 28 3.1
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514... 27 4.1
01_01_1216 - 9827190-9827531 27 7.2
>01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794
Length = 473
Score = 31.5 bits (68), Expect = 0.25
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -1
Query: 325 SLENKVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQMLTPVLIT 152
SLE+K+SELE K + LE R +P +N + A KR+ L + +T
Sbjct: 332 SLESKLSELEEKNRELEARLASRPAAAAKNDKGETAAAPAPEAGDETKRKDLVEIEVT 389
>01_01_0674 +
5162291-5162376,5162530-5162560,5162689-5163207,
5165561-5166010,5166050-5166134,5167374-5167399
Length = 398
Score = 29.5 bits (63), Expect = 1.0
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = -1
Query: 331 IISLENKVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQMLTPVLIT 152
I SLE+K+SELE K + LE R +P +N K + +A KR+ L + +T
Sbjct: 226 IKSLESKLSELEEKNRELEARLASRPAA-----KNDKGETAAAEAGDETKREDLVEIEVT 280
>10_08_0340 -
16934317-16934478,16934569-16934745,16934842-16934940,
16935025-16935225,16935389-16935409,16935554-16935661,
16935749-16936130,16936693-16936912,16938673-16938827,
16938960-16939183,16939648-16939707
Length = 602
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 312 LFSKEIIFLYYWIQFIIYRFCDVLSYRL 395
L + + FLYYW +I+ F ++++Y L
Sbjct: 133 LHAGPVEFLYYWFHPVIHPFAELVAYEL 160
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = -1
Query: 313 KVSELEMKIKSLEKRK---KKQPGVLLRNRRNWKLKNSAVFMATVIKRQML 170
K++ELE +IK+LEK K K+ L++ + K+K+ A F V K + L
Sbjct: 372 KITELEKRIKALEKDKGELTKKRDSALKDVEDRKIKSQAQFDVLVNKIKKL 422
>08_01_0418 -
3716226-3716279,3716531-3716581,3716656-3716751,
3717037-3717194,3717303-3717417,3717511-3717564,
3717843-3717950,3718494-3718583,3718818-3718856,
3718993-3719172,3719264-3719576,3719659-3719834
Length = 477
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -1
Query: 334 KIISLENKVSELEMKIKSLEKRK------KKQPGVLLRNRRNWKLK 215
KII + KV E+E +K+ EK+K + Q L + WKLK
Sbjct: 351 KIIEWDGKVHEMEEHVKAKEKKKDQIVADENQKLAALSSEVEWKLK 396
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 383 KNVTEPINYKLNPIIEENNFLRKQSIRTGDEN 288
K++ + + KLN EN+ LR+Q++RT +N
Sbjct: 969 KSMMQSLQEKLNSTEAENHVLRQQAMRTRPDN 1000
>01_01_0672 +
5147916-5147976,5148087-5148166,5148329-5148973,
5149111-5149341
Length = 338
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 325 SLENKVSELEMKIKSLEKRKKKQP 254
SLE+K+SELE K + LE R +P
Sbjct: 278 SLESKLSELEEKNRELEARLSTRP 301
>01_01_1216 - 9827190-9827531
Length = 113
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = -1
Query: 286 KSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQMLTPVLITMCF 143
++L K+KKK+ + +++ K + + M T IK+ + P++ + F
Sbjct: 41 EALSKKKKKKKKKKKKKKKHMKNASPCISMDTRIKKLAMRPIIGNVSF 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,076,550
Number of Sequences: 37544
Number of extensions: 68570
Number of successful extensions: 251
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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