Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_A13
(397 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF092563-1|AAC72360.1| 1197|Homo sapiens chromosome-associated p... 32 0.60
BC050059-1|AAH50059.1| 1502|Homo sapiens ARHGAP5 protein protein. 31 1.8
BC130385-1|AAI30386.1| 1197|Homo sapiens structural maintenance ... 29 4.2
BC071750-1|AAH71750.1| 356|Homo sapiens SMC2 protein protein. 29 4.2
BC055081-1|AAH55081.1| 209|Homo sapiens SMC2 protein protein. 29 4.2
BC032705-1|AAH32705.1| 781|Homo sapiens SMC2 protein protein. 29 4.2
AY739716-1|AAW65985.1| 760|Homo sapiens chromosome-associated p... 29 4.2
AL354938-1|CAI16923.1| 1197|Homo sapiens structural maintenance ... 29 4.2
AL161791-1|CAI16866.1| 1197|Homo sapiens structural maintenance ... 29 4.2
BC107572-1|AAI07573.1| 267|Homo sapiens IKIP protein protein. 29 5.6
AK123069-1|BAC85528.1| 244|Homo sapiens protein ( Homo sapiens ... 29 5.6
AJ539427-2|CAD62383.1| 244|Homo sapiens IKIP3 protein. 29 5.6
AJ539426-1|CAD62381.1| 350|Homo sapiens IKIP2 protein. 29 5.6
BC017845-1|AAH17845.1| 289|Homo sapiens Unknown (protein for IM... 29 7.4
AB209751-1|BAD92988.1| 1138|Homo sapiens Rho GTPase activating p... 29 7.4
AL590377-2|CAI14630.2| 1406|Homo sapiens chromosome 9 open readi... 28 9.7
AL354738-1|CAI16195.2| 1406|Homo sapiens chromosome 9 open readi... 28 9.7
AL354711-1|CAH72682.2| 1406|Homo sapiens chromosome 9 open readi... 28 9.7
AL162725-3|CAH70424.1| 1406|Homo sapiens chromosome 9 open readi... 28 9.7
AL133214-3|CAH70743.2| 1406|Homo sapiens chromosome 9 open readi... 28 9.7
>AF092563-1|AAC72360.1| 1197|Homo sapiens chromosome-associated
protein-E protein.
Length = 1197
Score = 32.3 bits (70), Expect = 0.60
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 7/40 (17%)
Frame = -1
Query: 334 KIISLENKVSELEMKIKSL-------EKRKKKQPGVLLRN 236
K+I L+ ++SE + KIK+L EKRK K+ GV+LR+
Sbjct: 259 KVIKLQEELSENDKKIKALNHEIEELEKRKDKETGVILRS 298
>BC050059-1|AAH50059.1| 1502|Homo sapiens ARHGAP5 protein protein.
Length = 1502
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -1
Query: 319 ENKVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQMLTPVLITMCFY 140
+ K+ + K+K +K+KKK RRNW+ + + ++ + P+ + C
Sbjct: 1224 DKKMKKKTHKVKEDKKQKKKTKNFNPPTRRNWESNYFGMPLQDLVTAEKPIPLFVEKCVE 1283
Query: 139 FV 134
F+
Sbjct: 1284 FI 1285
>BC130385-1|AAI30386.1| 1197|Homo sapiens structural maintenance of
chromosomes 2 protein.
Length = 1197
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 7/40 (17%)
Frame = -1
Query: 334 KIISLENKVSELEMKIKS-------LEKRKKKQPGVLLRN 236
K+I L+ ++SE + KIK+ LEKRK K+ G +LR+
Sbjct: 259 KVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRS 298
>BC071750-1|AAH71750.1| 356|Homo sapiens SMC2 protein protein.
Length = 356
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 7/40 (17%)
Frame = -1
Query: 334 KIISLENKVSELEMKIKS-------LEKRKKKQPGVLLRN 236
K+I L+ ++SE + KIK+ LEKRK K+ G +LR+
Sbjct: 259 KVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRS 298
>BC055081-1|AAH55081.1| 209|Homo sapiens SMC2 protein protein.
Length = 209
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 7/40 (17%)
Frame = -1
Query: 334 KIISLENKVSELEMKIKS-------LEKRKKKQPGVLLRN 236
K+I L+ ++SE + KIK+ LEKRK K+ G +LR+
Sbjct: 114 KVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRS 153
>BC032705-1|AAH32705.1| 781|Homo sapiens SMC2 protein protein.
Length = 781
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 7/40 (17%)
Frame = -1
Query: 334 KIISLENKVSELEMKIKS-------LEKRKKKQPGVLLRN 236
K+I L+ ++SE + KIK+ LEKRK K+ G +LR+
Sbjct: 259 KVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRS 298
>AY739716-1|AAW65985.1| 760|Homo sapiens chromosome-associated
protein E protein.
Length = 760
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 7/40 (17%)
Frame = -1
Query: 334 KIISLENKVSELEMKIKS-------LEKRKKKQPGVLLRN 236
K+I L+ ++SE + KIK+ LEKRK K+ G +LR+
Sbjct: 259 KVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRS 298
>AL354938-1|CAI16923.1| 1197|Homo sapiens structural maintenance of
chromosomes 2 protein.
Length = 1197
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 7/40 (17%)
Frame = -1
Query: 334 KIISLENKVSELEMKIKS-------LEKRKKKQPGVLLRN 236
K+I L+ ++SE + KIK+ LEKRK K+ G +LR+
Sbjct: 259 KVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRS 298
>AL161791-1|CAI16866.1| 1197|Homo sapiens structural maintenance of
chromosomes 2 protein.
Length = 1197
Score = 29.5 bits (63), Expect = 4.2
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 7/40 (17%)
Frame = -1
Query: 334 KIISLENKVSELEMKIKS-------LEKRKKKQPGVLLRN 236
K+I L+ ++SE + KIK+ LEKRK K+ G +LR+
Sbjct: 259 KVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGILRS 298
>BC107572-1|AAI07573.1| 267|Homo sapiens IKIP protein protein.
Length = 267
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 331 IISLENKVSELEMKIKSLEKRKKKQPGVLL 242
+ISL + V ELE KI+ +EK K G LL
Sbjct: 106 VISLTDSVQELENKIEKVEKNTVKNIGDLL 135
>AK123069-1|BAC85528.1| 244|Homo sapiens protein ( Homo sapiens
cDNA FLJ41074 fis, clone 3NB692008729. ).
Length = 244
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 331 IISLENKVSELEMKIKSLEKRKKKQPGVLL 242
+ISL + V ELE KI+ +EK K G LL
Sbjct: 83 VISLTDSVQELENKIEKVEKNTVKNIGDLL 112
>AJ539427-2|CAD62383.1| 244|Homo sapiens IKIP3 protein.
Length = 244
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 331 IISLENKVSELEMKIKSLEKRKKKQPGVLL 242
+ISL + V ELE KI+ +EK K G LL
Sbjct: 83 VISLTDSVQELENKIEKVEKNTVKNIGDLL 112
>AJ539426-1|CAD62381.1| 350|Homo sapiens IKIP2 protein.
Length = 350
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 331 IISLENKVSELEMKIKSLEKRKKKQPGVLL 242
+ISL + V ELE KI+ +EK K G LL
Sbjct: 189 VISLTDSVQELENKIEKVEKNTVKNIGDLL 218
>BC017845-1|AAH17845.1| 289|Homo sapiens Unknown (protein for
IMAGE:4699860) protein.
Length = 289
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 334 KIISLENKVSELEMKIKSLEKRKKKQ 257
K+I L+ ++SE + KIK+L KKK+
Sbjct: 259 KVIKLQEELSENDKKIKALNHEKKKK 284
>AB209751-1|BAD92988.1| 1138|Homo sapiens Rho GTPase activating
protein 5 variant protein.
Length = 1138
Score = 28.7 bits (61), Expect = 7.4
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -1
Query: 319 ENKVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQMLTPVLITMCFY 140
+ K+ + K+K +K+KKK RRNW+ + + ++ + P+ + C
Sbjct: 861 DKKMKKKTHKVKE-DKKKKKTKNFNPPTRRNWESNYFGMPLQDLVTAEKPIPLFVEKCVE 919
Query: 139 FV 134
F+
Sbjct: 920 FI 921
>AL590377-2|CAI14630.2| 1406|Homo sapiens chromosome 9 open reading
frame 39 protein.
Length = 1406
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 313 KVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQ 176
KV+ELE ++KS EKR +K N KL F+ +++K+Q
Sbjct: 693 KVTELENRLKSFEKRSRK------LKEGNKKLMKENDFLKSLLKQQ 732
>AL354738-1|CAI16195.2| 1406|Homo sapiens chromosome 9 open reading
frame 39 protein.
Length = 1406
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 313 KVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQ 176
KV+ELE ++KS EKR +K N KL F+ +++K+Q
Sbjct: 693 KVTELENRLKSFEKRSRK------LKEGNKKLMKENDFLKSLLKQQ 732
>AL354711-1|CAH72682.2| 1406|Homo sapiens chromosome 9 open reading
frame 39 protein.
Length = 1406
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 313 KVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQ 176
KV+ELE ++KS EKR +K N KL F+ +++K+Q
Sbjct: 693 KVTELENRLKSFEKRSRK------LKEGNKKLMKENDFLKSLLKQQ 732
>AL162725-3|CAH70424.1| 1406|Homo sapiens chromosome 9 open reading
frame 39 protein.
Length = 1406
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 313 KVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQ 176
KV+ELE ++KS EKR +K N KL F+ +++K+Q
Sbjct: 693 KVTELENRLKSFEKRSRK------LKEGNKKLMKENDFLKSLLKQQ 732
>AL133214-3|CAH70743.2| 1406|Homo sapiens chromosome 9 open reading
frame 39 protein.
Length = 1406
Score = 28.3 bits (60), Expect = 9.7
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 313 KVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQ 176
KV+ELE ++KS EKR +K N KL F+ +++K+Q
Sbjct: 693 KVTELENRLKSFEKRSRK------LKEGNKKLMKENDFLKSLLKQQ 732
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,587,733
Number of Sequences: 237096
Number of extensions: 404404
Number of successful extensions: 1312
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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