Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A13
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    27   3.7  
U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated p...    27   4.9  
AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2 ...    27   4.9  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    27   6.4  
Z82055-6|CAB04851.1|  365|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
           protein B0198.3 protein.
          Length = 1050

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 253 GVLLRNRRNWKLKNSAVFMATVIKRQ-MLTPV 161
           G+L+ N R   L N  + + +V++RQ M+TPV
Sbjct: 788 GILMENCRGGSLHNYIISVGSVLRRQVMVTPV 819


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform a protein.
          Length = 1595

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 392  SVTKNVTEPINYKLNPIIEENNFLRKQSIRT 300
            S+  ++  P N KL  I+EE+N LR +++ T
Sbjct: 1493 SMVTSIISPYNDKLTGIMEESNSLRIETVPT 1523


>U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated
           protein 27 protein.
          Length = 242

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 337 RKIISLENKVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQML 170
           RK    E K +E+  +++    +KK + G L   R+    K   V  A  +KRQ L
Sbjct: 11  RKAAEREAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQL 66


>AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2
           protein.
          Length = 242

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 337 RKIISLENKVSELEMKIKSLEKRKKKQPGVLLRNRRNWKLKNSAVFMATVIKRQML 170
           RK    E K +E+  +++    +KK + G L   R+    K   V  A  +KRQ L
Sbjct: 11  RKAAEREAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQL 66


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 312 LFSKEIIFLYYWIQFIIYR 368
           L SK+IIFL + +QF +Y+
Sbjct: 510 LISKKIIFLIFQVQFALYK 528


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like protein
            protein 4,isoform c protein.
          Length = 1576

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 389  VTKNVTEPINYKLNPIIEENNFLRKQSIRT 300
            V  ++  P N KL  I+EE+N LR +++ T
Sbjct: 1475 VMTSIISPYNDKLTGIMEESNSLRIETVPT 1504


>Z82055-6|CAB04851.1|  365|Caenorhabditis elegans Hypothetical
           protein T26H2.6 protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 319 ENKVSELEMKIKSLEKRKKKQPG 251
           +N+ S +EM + S+  RKK++ G
Sbjct: 328 QNRCSTIEMNVSSISSRKKEKKG 350


>U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical
           protein K09E2.2 protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 337 RKIISLENKVSELEMKIKSLEKRKKKQ 257
           RK +  +   + +E+ +KS EKRKKKQ
Sbjct: 230 RKKVVKKGLTNTIELALKSGEKRKKKQ 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,825,517
Number of Sequences: 27780
Number of extensions: 75795
Number of successful extensions: 380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)