Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_A12
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 36 0.022
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 31 0.62
01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485 30 1.1
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 30 1.4
09_04_0541 + 18437075-18440062 29 1.9
07_01_0469 - 3552409-3553368 29 2.5
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 28 4.4
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 28 4.4
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 28 5.8
09_06_0028 + 20328599-20328821,20330659-20330735,20330806-203309... 27 7.7
09_04_0303 - 16505782-16506902,16507232-16507292 27 7.7
08_02_0989 + 23368902-23369363,23370299-23370304 27 7.7
05_05_0017 + 21546434-21546841 27 7.7
02_02_0400 + 9836045-9837115,9837474-9838577 27 7.7
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 35.9 bits (79), Expect = 0.022
Identities = 28/89 (31%), Positives = 38/89 (42%)
Frame = +2
Query: 251 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPI 430
S S P+S P SP+ SPT Y YSP + +Y +P YS P P + +
Sbjct: 1710 SPSYSPTSPSYSYSPTSPSYSPT-SPSYNYSP--TSPSYSPTSPSYS-PTSPSYSPTS-- 1763
Query: 431 PISIPAGASLTPVSLQHVQLVPCMCPVAP 517
P P S +P S + P P +P
Sbjct: 1764 PSYSPTSPSYSPTSSAYSPTSPAYSPTSP 1792
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 31.1 bits (67), Expect = 0.62
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Frame = +2
Query: 257 SAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPI 436
S+ ++++ P++ + S +RY+YM + + +L+AP EV ++ I +
Sbjct: 27 SSGTATRRNAGSPVALSSSDKVRYRYMMAIHALQLDVKLEAPN-RLGEVAARMSVPAIAV 85
Query: 437 -SIPAGASLTPVSLQHVQL-----VPCMCPVAPEEAEKLREQSGAG 556
+ P GA T S ++ PC P A R Q+ AG
Sbjct: 86 YTSPPGAVYTSSSSSELEASSRGSAPCATAAPPSPASSHRHQAIAG 131
>01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485
Length = 283
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 373 ASTAILSARSSDPPKYG-SYTYQYSCRSEPYP 465
AS + DPP Y +YTY+++C + P P
Sbjct: 105 ASKLVQQENDDDPPLYRVTYTYEHTCNTTPVP 136
>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 263 PPSSQKTWVQPLSPNVSPTIRYQYM-YSPYESHKTYQLQAPQYSQP-EVPIHQNMAPIPI 436
PPS + Q LS ++S TIR + ++ + HK +QP ++P+ N
Sbjct: 1394 PPSQHGSATQALSTDISSTIRLKKAGHASSDDHKLESGGVTSAAQPVDIPVSTNKEAGSF 1453
Query: 437 SIPAGASLTPVSLQHV 484
P+G S+ S + +
Sbjct: 1454 ISPSGTSVDGPSFREM 1469
>09_04_0541 + 18437075-18440062
Length = 995
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +2
Query: 245 WGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMA 424
W + +P S ++ SP S + + SPY S + PQ QP+ P +
Sbjct: 40 WSNPISPAISFSPYLNSPSPPSSAFV--SALQSPYVSPRLADPPPPQQPQPQTPRQRQHR 97
Query: 425 PIPIS-IPAGASLTPVSLQHV 484
S + A A+ TP S V
Sbjct: 98 ETKASDVAAAAASTPTSCTDV 118
>07_01_0469 - 3552409-3553368
Length = 319
Score = 29.1 bits (62), Expect = 2.5
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Frame = +2
Query: 299 SPNVSPTIRYQYMYSPYESHKTYQLQAPQY--SQPEVPIHQNMAPIPISIPAGA-SLTPV 469
+P S T + +P + AP + P VP +AP+P+S PA A S P
Sbjct: 190 TPRKSTTAPVRIQLAPRNPPPSAAPAAPPVPPAAPAVPAAPALAPVPVSAPASALSFAPA 249
Query: 470 SLQHVQLV--PCMCPVAPEEAEKLREQSGAG 556
S V P P + L S +G
Sbjct: 250 SAVRVPSSGNGGWLPATPSGSRDLSSSSSSG 280
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 347 YESHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLTPVSLQH---VQLVPCMCPVAP 517
++ +T QLQ Q Q V HQ + P+ + AS+ H +QL+ + P P
Sbjct: 555 HQQQQTQQLQPVQQVQQSVQEHQQIKIQPVHVSMDASMNTQVADHQMKLQLLKALQPQQP 614
Query: 518 EEAEK 532
+E+
Sbjct: 615 LISEQ 619
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 254 DSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPY--ESHKTYQLQAPQYSQPEVPIHQNMAP 427
DS+P + W P +P P+ R + +P+ S + P P P ++ +P
Sbjct: 6 DSSPAPPHRDWFFPPAPPFLPSSRARTPRAPFPSTSRSSNPYSFPDRRPPPTPRSRSRSP 65
Query: 428 IP 433
+P
Sbjct: 66 LP 67
>10_07_0061 + 12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 293 PLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQ 415
PL+P ++ Q+ +P + + QLQ Q Q + I Q
Sbjct: 1113 PLTPQQQMQLQQQFQQNPLQQQQLQQLQQQQQQQQQQQIQQ 1153
>09_06_0028 +
20328599-20328821,20330659-20330735,20330806-20330968,
20331095-20331156,20331250-20331328,20331818-20331898,
20332068-20332216,20332254-20332319,20332495-20332643,
20332722-20332761,20333001-20333015
Length = 367
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 383 QYSQPEVPIHQNMAPIPISIPAGASLTPVSLQHVQLVPCMCPVAPEEA 526
QY V Q AP P+ +P A + Q P + PVAP A
Sbjct: 8 QYQYAAVDPRQQ-APAPVPVPTPALMWQQQQQQAGYQPAVAPVAPPMA 54
>09_04_0303 - 16505782-16506902,16507232-16507292
Length = 393
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 238 FEMGVGLSSAVITEDLGSTIIS*RLPDNPLSIYVFAI*IAQNISTASTAILSARSSDP 411
F +G GL SAV T + ++ RL P + A + + + A+TAIL RS P
Sbjct: 72 FVLGAGLFSAVSTALYPAVVLKTRLQVAPSPAHAAASSLPPSAAAAATAIL--RSEGP 127
>08_02_0989 + 23368902-23369363,23370299-23370304
Length = 155
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 380 PQYSQPEVPIHQNMAPIPISIPAGASLTP 466
P+ QP +P HQ MAP +S + +L P
Sbjct: 4 PEQQQPPLPHHQLMAPPRMSFSSDFALEP 32
>05_05_0017 + 21546434-21546841
Length = 135
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 371 LQAPQYSQPEVPIHQNMAPIPISIPAGASLTPVSLQHVQLVPCMCPVA 514
L P+ +P P+ P P S PAGA+ TP P P A
Sbjct: 61 LSTPELCRPGEPV-----PAPSSSPAGATTTPAPAAPAATAPAPSPEA 103
>02_02_0400 + 9836045-9837115,9837474-9838577
Length = 724
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 257 SAPPSSQKTWVQPLSPNVSP--TIRYQYMYSPYESHKTYQL 373
SA P S W+ PL N + T +Y YSPY HK +++
Sbjct: 393 SAVPPSYPAWITPLLLNAADVGTTNIRY-YSPY-FHKNFEI 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,053,320
Number of Sequences: 37544
Number of extensions: 344939
Number of successful extensions: 1026
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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