Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A10
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      129   2e-32
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  129 bits (312), Expect = 2e-32
 Identities = 66/147 (44%), Positives = 95/147 (64%), Gaps = 4/147 (2%)
 Frame = +3

Query: 96  NKLNVLLQEIGQNQ-DPGAK--TIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERD 266
           NK   LL+EI + + D G    T++FVE K+KA+ I   +    +P   +HGD+ Q++R+
Sbjct: 432 NKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQRE 491

Query: 267 EVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTS 446
           E L  FK GR SILVAT VAARGLD+  + +VIN+D P   ++Y+HRIGRTGR   +G +
Sbjct: 492 EALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRA 551

Query: 447 YAFFTPSNSRQAK-DLVSVLQEANQII 524
            +FF P      + DLV +L++ANQ +
Sbjct: 552 TSFFDPEEDAPLRGDLVRILKQANQSV 578


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -2

Query: 352  IPSTSRPLAATSVATSILERPSLNWYNTSSLSCCVLSPCMHTAGHPYRLIFLVMFSAFLL 173
            +P TS P ++TS+ +  +E+  +N   T   +        +  G P   + +V  SA  L
Sbjct: 854  VPITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNIGGKP---VAVVKSSAQSL 910

Query: 172  VSTN 161
            + +N
Sbjct: 911  LQSN 914


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 81  EHEKENKLNVLLQEIGQN 134
           ++  ENKLN  +++IG N
Sbjct: 213 DYNLENKLNYFIEDIGLN 230


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 168 ETKRKAENITRNIRRYGWPAVCMHGDKTQQERDE 269
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 256 KKGMKYYTNLKRVVPVYL*QLMLLPEV 336
           KK M  Y   ++ +PVY    ++LP V
Sbjct: 439 KKVMNLYQQYQQSLPVYQYNDLILPGV 465


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 19  ILDHFNYLQII 51
           +L HFNY+++I
Sbjct: 161 LLKHFNYMKVI 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,756
Number of Sequences: 438
Number of extensions: 3379
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)