Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A09
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    29   0.27 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   5.8  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   5.8  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   5.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   5.8  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   5.8  
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    25   7.7  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    25   7.7  
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    25   7.7  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    25   7.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   7.7  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   7.7  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 303 PTHTAFSSTQ*L-SENPLAPSGIGSTSNMPSPLPLQFGNSSGNVVY 437
           P+   F ST    S+NPL+ SG GST+    P+  Q  N+  N  Y
Sbjct: 207 PSSQQFPSTYPSRSQNPLSSSGDGSTAIHAGPIQHQNSNAFSNYPY 252


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 173 SIQPKDCWT*VSPKISPSTGLAPTASSALPLPSTGPRST 289
           SI P    + +S  I+P+     T+S+++P+P T   ST
Sbjct: 120 SIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSST 158



 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 173 SIQPKDCWT*VSPKISPSTGLAPTASSALPLPSTGPRST 289
           SI P    + +S  I+P+     T+S+++P+P T   ST
Sbjct: 177 SIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSST 215



 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 203 VSPKISPSTGLAPTASSALPLPSTGPRST 289
           +S  I+P+     T+S+++P+P T   ST
Sbjct: 243 LSTPITPTVPPTSTSSTSIPIPPTSTSST 271


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 203  VSPKISPSTGLAPTASSALPLPSTGP 280
            V+P  +PS+ L P+ SS   +PS  P
Sbjct: 1509 VAPATAPSSTLPPSQSSFAHVPSPAP 1534


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 169 SIHSTERLLDIGLP*DLPVDWSCANRIQRTPATFNRSSIHF 291
           SI   ER++D+ +  +  +DW C +       T +    HF
Sbjct: 374 SIWLIERMMDLNVAEERMIDWKCLSEYANHLWTADACKSHF 414


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -2

Query: 106 CI-IHWIILAASLECHF 59
           C+ +HWI  + S+ CHF
Sbjct: 79  CVALHWIAFSCSVMCHF 95


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 203 VSPKISPSTGLAPTASSALPLPSTGPRSTLW 295
           +  K+  S G   TASSALPL    P +  W
Sbjct: 83  IDAKLGSSEG--STASSALPLTPRSPSNASW 111


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 413 AKLKWQWAGHIARRTYAGW 357
           ++LK   +GH+  R+YA W
Sbjct: 377 SRLKIHASGHVVERSYASW 395


>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 106 KIRDNKNRYLKKLLNYHC*FPSIH 177
           K  D +  Y+K+LLN H  FP  H
Sbjct: 130 KKEDVRRNYVKQLLNPHLKFPLPH 153


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 229 SRRGDLRGDLCPAVFRLNGWMGINNDNSTIFL 134
           ++RG+   DL  A + LNG  GI  D    F+
Sbjct: 470 AKRGETEADLAVAKWYLNGSDGIPVDEDLAFM 501


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 106 KIRDNKNRYLKKLLNYHC*FPSIH 177
           K  D +  Y+K+LLN H  FP  H
Sbjct: 130 KKEDVRRNYVKQLLNPHLKFPLPH 153


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 241 NRIQRTPATFNRSSIHFVVGSLPTL 315
           +R+QRTPAT  +  +H    S+  L
Sbjct: 216 HRVQRTPATETKGRVHTSTASVIVL 240


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 336 LSENPLAPSGIGSTSNMPSPLP 401
           +S+ P+ P G+     MP+P P
Sbjct: 519 MSQPPMVPPGMALPPGMPAPFP 540


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 288 LCGGEPTHTAFSSTQ*LSENPLAPSGIGSTSNMPSPLPL 404
           +    P   + S+ +  + NP+ PS +   S MPS +P+
Sbjct: 551 IANSRPEGNSGSAKKAAAANPMIPSIVLPNSAMPSAMPM 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,004
Number of Sequences: 5004
Number of extensions: 43006
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)