Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A09
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.41 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   3.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   3.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   3.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 241 NRIQRTPATFNRSSIHFVVGSLPTLRFPV-RSSYLR 345
           N ++RTP+  +++S+H+  G   +   P  RS++L+
Sbjct: 356 NTLERTPSKCSQTSVHYSNGQTHSQLCPTPRSTHLK 391


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 300 EPTHTAFSSTQ*LSENPLAP 359
           EPT+TA  S +   E PL P
Sbjct: 426 EPTNTASGSNEDEDETPLDP 445


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 401 WQWAGHIARRTYAGWSQW 348
           W  +G I+    AGW+ W
Sbjct: 161 WILSGAISSPPLAGWNDW 178


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 401 WQWAGHIARRTYAGWSQW 348
           W  +G I+    AGW+ W
Sbjct: 161 WILSGAISSPPLAGWNDW 178


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 401 WQWAGHIARRTYAGWSQW 348
           W  +G I+    AGW+ W
Sbjct: 161 WILSGAISSPPLAGWNDW 178


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 53  RNKMTLERSRENNPVDNT 106
           +N   LERSR  + +DNT
Sbjct: 351 KNTTGLERSRSWSSLDNT 368


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 109 FCIIHWIILAASLECHFIS 53
           F ++H+     S EC+F S
Sbjct: 294 FAVVHYFTKYGSGECYFSS 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,018
Number of Sequences: 438
Number of extensions: 3046
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)