Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A07
         (220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0050 - 4596444-4596634,4596855-4597107                           27   2.1  
04_04_0036 - 22307328-22308026                                         27   2.1  
06_03_0745 + 24109406-24109921                                         26   3.6  
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    25   6.3  
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271...    25   6.3  
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558...    25   8.3  
04_03_0595 - 17749777-17750921,17752022-17752043                       25   8.3  

>10_02_0050 - 4596444-4596634,4596855-4597107
          Length = 147

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +1

Query: 4   RGDGGSLGSRVDEERS*LRV 63
           RG GG+  SRV+EERS LRV
Sbjct: 62  RGGGGAKSSRVEEERS-LRV 80


>04_04_0036 - 22307328-22308026
          Length = 232

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 159 RPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 61
           RP  R G    + +R V+    CRC+   C  HYD
Sbjct: 113 RPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147


>06_03_0745 + 24109406-24109921
          Length = 171

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
 Frame = -2

Query: 156 PSDRSGPGCVSTDRN----VRSKCRCSNVSCSSH 67
           P  R GP   ST R         CRC N+ C+ H
Sbjct: 103 PKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMH 136


>07_01_0733 +
           5570084-5570282,5570395-5570600,5572484-5572624,
           5572773-5572949,5573049-5573145,5573575-5573687,
           5573774-5573896,5574004-5574075,5575340-5575432,
           5575564-5575674,5575767-5575889,5576834-5576890,
           5576939-5577022,5577140-5577214,5577418-5577554,
           5577719-5577853,5579029-5579168,5579334-5579399,
           5579732-5579838,5579910-5579990,5580064-5580138,
           5580224-5580325,5581837-5582005,5582090-5582217,
           5582596-5582679,5582779-5582879,5583729-5583882,
           5583964-5584038,5584112-5584262,5584463-5585078,
           5585427-5585487,5585874-5586019,5586104-5586287,
           5586363-5586440,5586603-5586931,5587023-5587199,
           5587571-5587667,5587742-5587897,5587962-5588198,
           5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 51  LTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC 164
           L+A+ S +NC + +  +IS  H G   H    + + AGC
Sbjct: 725 LSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGC 763


>01_05_0597 -
           23526705-23526749,23526794-23526905,23527068-23527134,
           23527439-23527566,23527638-23527750,23527827-23527972,
           23528419-23528525,23528667-23528873,23530878-23531129,
           23531324-23531406
          Length = 419

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 147 RSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQL 52
           R GP    T   VR +CR    +CS   DA L
Sbjct: 7   RGGPRRSVTTEEVRGECRGGGSTCSCAADALL 38


>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
            5588428-5588484,5588663-5588800,5588901-5588966,
            5589234-5589452,5589522-5589737,5589813-5589884,
            5589952-5590205,5590356-5590525,5590840-5591029,
            5592211-5592331,5592838-5592921,5593003-5593365,
            5594530-5594724,5594938-5595933,5596329-5596370
          Length = 1240

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -2

Query: 162  SRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYD---AQLTAFFIDPRAK*STV 10
            S P D+    C    RNV S  +CS V C   +    A+   F++D +   ST+
Sbjct: 976  SLPKDKDT--CAICHRNVGSCLKCSTVDCQITFHPTCARDAGFYMDTKTIGSTL 1027


>04_03_0595 - 17749777-17750921,17752022-17752043
          Length = 388

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 163 QPALRQEWSWMCLHGPQCAFEMSMFKCVLQFTL*R 59
           Q  +RQ   +   HG Q   +M    C L+FTL R
Sbjct: 35  QRLIRQRDEYFQQHGGQLLSDMMKIDCNLEFTLYR 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,615,157
Number of Sequences: 37544
Number of extensions: 88499
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)