Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A07
         (220 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y15771-1|CAA75773.1|  122|Homo sapiens immunoglobulin heavy chai...    28   6.2  
Y08408-1|CAA69684.1|  125|Homo sapiens immunoglobulin protein.         28   6.2  
S74501-1|AAB33279.2|  115|Homo sapiens Ig heavy chain variable r...    27   8.2  
AK125527-1|BAC86195.1|  152|Homo sapiens protein ( Homo sapiens ...    27   8.2  

>Y15771-1|CAA75773.1|  122|Homo sapiens immunoglobulin heavy chain
           Fab fragment protein.
          Length = 122

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 144 SGPGCVSTDRNVRSKCRCSNVSCSSHY 64
           SGPG V     +   C  S+VS  SHY
Sbjct: 7   SGPGLVKPSETLSLTCTVSDVSIRSHY 33


>Y08408-1|CAA69684.1|  125|Homo sapiens immunoglobulin protein.
          Length = 125

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 144 SGPGCVSTDRNVRSKCRCSNVSCSSHY 64
           SGPG V     +   C  S  S SSHY
Sbjct: 7   SGPGLVKPSETLSLTCTVSGASISSHY 33


>S74501-1|AAB33279.2|  115|Homo sapiens Ig heavy chain variable
           region protein.
          Length = 115

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 147 RSGPGCVSTDRNVRSKCRCSNVSCSSHY 64
           +SGPG V     +   C  S VS SS+Y
Sbjct: 6   QSGPGLVKPSETLSLTCTVSGVSISSYY 33


>AK125527-1|BAC86195.1|  152|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43539 fis, clone PLACE7008623. ).
          Length = 152

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = -2

Query: 159 RPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFF--IDPRA 25
           RP  R GP C   DR + SK          H    L+  F   DP+A
Sbjct: 46  RPGQRRGPCCSRIDRQLASKLGAQRQRLPIHLSTLLSHLFPKDDPKA 92


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,263,406
Number of Sequences: 237096
Number of extensions: 481990
Number of successful extensions: 1502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 76,859,062
effective HSP length: 51
effective length of database: 64,767,166
effective search space used: 1360110486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)