Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A06
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   2.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.2  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -3

Query: 362 ITFQMFPHGDSLLDQVVQIFR*IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRS 183
           + F +    D     ++Q+ R +R    S  D   L   N   + +    P H +DL   
Sbjct: 128 LQFDVLVKVDMTRQYLLQLIRNLRQS--SALDGVTLLADNSVSIKDPW-FPRHASDLDNC 184

Query: 182 KTLFAKFE-DLFLN 144
             L  KFE DL +N
Sbjct: 185 NHLMTKFEPDLDMN 198


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 309 LYYLIKKAVAMRKHLERNRKD 371
           LYY + K +  R  LER   D
Sbjct: 260 LYYFLHKQLMTRYFLERMSND 280


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 309 LYYLIKKAVAMRKHLERNRKD 371
           LYY + K +  R  LER   D
Sbjct: 260 LYYFLHKQLMTRYFLERMSND 280


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 254 FTSNKSDLCNTMRVPEHDTDLGRSKTL 174
           F + KS    TM +P H   L + KT+
Sbjct: 125 FKNAKSVTFQTMTIPNHYLWLYKDKTI 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,292
Number of Sequences: 438
Number of extensions: 2743
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)