Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A04
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   0.52 
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   0.52 
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   2.1  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    23   4.9  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    23   4.9  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    23   6.4  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    23   6.4  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    23   6.4  
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    23   8.5  
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    23   8.5  

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 0.52
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 SLFIVNVTNLTYLKKEGFN*RIRIVNNPGDNVV 203
           S+ I N TN+TYL+   +N    +    GDNV+
Sbjct: 186 SVAINNFTNITYLRDNVWNLEHSVFAPHGDNVI 218


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 0.52
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 SLFIVNVTNLTYLKKEGFN*RIRIVNNPGDNVV 203
           S+ I N TN+TYL+   +N    +    GDNV+
Sbjct: 186 SVAINNFTNITYLRDNVWNLEHSVFAPHGDNVI 218


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 105 SLFIVNVTNLTYLKKEGFN*RIRIVNNPGDNVV 203
           S+ + N  N+TYL+   +N    +    GDNVV
Sbjct: 150 SVAVNNFANITYLRDNVWNLEHSVFAPHGDNVV 182


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 3   TMVIMNGTFETSNNVV 50
           T+V  N TFETSN+ V
Sbjct: 149 TLVDQNSTFETSNSSV 164


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 175 LLIIPVIMLYYYMSCNCKNNNISLYY 252
           L IIP + + Y++SC C    +SL +
Sbjct: 83  LRIIPCLWILYFLSC-CLRFTVSLSF 107


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 163 KEFVLLIIPVIMLYY 207
           K  V L+ PVI+LYY
Sbjct: 318 KNQVFLVFPVIVLYY 332


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 752

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 56 KSYYIVTSLECSIHYH 9
          KS   V+SLEC I YH
Sbjct: 12 KSDTSVSSLECEIDYH 27


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 148 FFKYVRFVTFTINKLMF 98
           FF YV F   TIN L F
Sbjct: 93  FFDYVEFYFCTINSLRF 109


>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 132 LTYLKKEGFN*R---IRIVNNPGDNVVLLYV 215
           +TY ++  +N R    RI+  PG+N+  L++
Sbjct: 5   VTYRRRLAYNTRSNRTRIIKTPGNNIRYLHI 35


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 132 LTYLKKEGFN*R---IRIVNNPGDNVVLLYV 215
           +TY ++  +N R    RI+  PG+N+  L++
Sbjct: 5   VTYRRRLAYNTRSNKTRIIKTPGNNIRYLHI 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 826,455
Number of Sequences: 5004
Number of extensions: 12056
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)