Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A04
         (256 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0817 + 6533316-6533849,6533996-6534064,6534528-6534767,653...    26   3.6  
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285...    26   3.6  
01_05_0217 - 19390788-19391048,19392205-19392438,19393474-193937...    25   6.4  

>07_01_0817 +
           6533316-6533849,6533996-6534064,6534528-6534767,
           6537747-6537965,6538041-6538133,6538231-6538332,
           6538415-6538858
          Length = 566

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 95  IERERDSQRHTLYKSYYIVTSLECSIH 15
           +ER+ + +RH LYK+Y   T+ +C  H
Sbjct: 310 VERQYNVRRHKLYKTY--CTTKQCPSH 334


>02_04_0160 -
           20427774-20428217,20428301-20428402,20428503-20428595,
           20428675-20428860,20428966-20429213,20429292-20429412,
           20430674-20430718,20431086-20431138,20431152-20431173
          Length = 437

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 95  IERERDSQRHTLYKSYYIVTSLECSIH 15
           +ER+ + +RH LYK+Y   T+ +C  H
Sbjct: 181 VERQYNVRRHKLYKTY--CTTKQCPSH 205


>01_05_0217 -
           19390788-19391048,19392205-19392438,19393474-19393798,
           19395781-19396121,19396422-19396502,19396640-19396759,
           19397028-19397129,19397811-19397946,19398508-19398654,
           19399024-19399337
          Length = 686

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 172 VLLIIPVIMLYYYMSC 219
           VLL++PV+  Y+Y  C
Sbjct: 571 VLLVLPVVTFYFYKYC 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,671,348
Number of Sequences: 37544
Number of extensions: 60090
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)