Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A04
         (256 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z92973-1|CAB07493.2|  323|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical p...    25   7.4  
AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    25   7.4  

>U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical
           protein F48E8.2 protein.
          Length = 467

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 98  LIERERDSQRHTLYKSYY 45
           ++E  RD QRH +YK+ Y
Sbjct: 371 MVELTRDCQRHEIYKTQY 388


>Z92973-1|CAB07493.2|  323|Caenorhabditis elegans Hypothetical
           protein Y6G8.1 protein.
          Length = 323

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 157 LIKEFVLLIIPVIMLYYYMSCNCKNNNI 240
           L+ +FV +  P+I+   Y++CN +N+N+
Sbjct: 261 LLSDFVTM--PLIIQVSYLACNKRNSNM 286


>Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical
           protein C55A1.14 protein.
          Length = 323

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 187 PVIMLYYYMSCNCKNNNISL 246
           P+I+ + Y++CN +N NI L
Sbjct: 268 PLIIQFSYLACNKRNMNILL 287


>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 175 LLIIPVIMLYYYMSCNCKNNNISL 246
           ++  P+I+   Y+SCN +N N+ L
Sbjct: 247 IITTPLIVQMSYLSCNKRNMNVLL 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,460,707
Number of Sequences: 27780
Number of extensions: 64843
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)