Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A04
         (256 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    27   0.036
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   0.78 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   5.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   7.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    19   9.6  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 27.1 bits (57), Expect = 0.036
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 15  MNGTFETSNNVVGFIKCVPLTVSLSLY*NI-SLFIVNVTNL 134
           MNGT    N++VGF+K  PL  ++ +   + S+++    N+
Sbjct: 13  MNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNI 53


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 0.78
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 72  LTVSLSLY*NISLFIVNVTNLTYLKKEGFN*RIRIVNNPGDNVVLLYV 215
           + VS  LY   +  +++  NLT  K E  +  + +V+NP     L+Y+
Sbjct: 277 MMVSPRLYDRQNGLVLSRMNLTLAKMEKTSKPLPMVDNPESTGNLVYI 324


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 27  FETSNNVVGFIKCVPLTVSLS 89
           F T NNV   I  + +T+SLS
Sbjct: 869 FGTGNNVALRITSMSVTISLS 889


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 169 FVLLIIPVIMLYY 207
           F+ L+IP ++LY+
Sbjct: 15  FLSLLIPALILYF 27


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 18  NGTFETSNNVVGFIKCVPLTVS 83
           NG  E ++ +   IKC PL ++
Sbjct: 227 NGVHEENSPLEDNIKCEPLELT 248


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 93  RERERQSKAHT 61
           RERER+ + H+
Sbjct: 73  REREREQREHS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,423
Number of Sequences: 438
Number of extensions: 1102
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)