Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A02
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.19 
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    27   1.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   4.1  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    25   5.4  
SPAC1610.02c |||mitochondrial ribosomal protein subunit L1|Schiz...    24   7.1  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    24   9.4  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     24   9.4  

>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 15  SKCRSPPSRC----SLLSVVAPLKTQKCCMPQD*SPLQPGLLSSATQLLCDHS 161
           S  +SPPSR     S+LS   PLK          SPL+    SS T ++ DHS
Sbjct: 202 STIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIVDHS 254


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 10  NIPNAGLLLLGV-LCCQSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATTRSS 168
           N+P A +L L V + C     S    A    + +PCSQ  +L++  SC T  S+
Sbjct: 356 NMPFASVLPLAVSVSCDLGTAS----AYVASLPQPCSQKRHLEEDYSCLTEHSA 405


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 175  CRHCCEWSHKSCVAEDS 125
            C +C EW H  CV   S
Sbjct: 1472 CHNCLEWFHYECVGLSS 1488


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 88  VCRKIDRPCSQDCYLQQHSSC 150
           VC K DRP   +     HSSC
Sbjct: 83  VCTKCDRPFLSEYIEDHHSSC 103


>SPAC1610.02c |||mitochondrial ribosomal protein subunit
           L1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 253

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 9   EHSKCRSPPSRCSLLSVVAPLKTQKCCMP 95
           E SKC + P+   LL  VA L   K  MP
Sbjct: 135 EFSKCFAHPNSAELLPQVAKLLGSKRLMP 163


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 79  CVLRGATTDNKEHREGGDRHLECSL 5
           CV+R    DN+    GG   + CSL
Sbjct: 409 CVVRNLIRDNRVVYGGGAAEISCSL 433


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 135 ATQLLCDHSQQCLHTHRLFQLHLLN 209
           A+ +L   S+Q  HTHR F+  +++
Sbjct: 118 ASSILSSLSRQFFHTHRAFKADVMD 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,472,549
Number of Sequences: 5004
Number of extensions: 24643
Number of successful extensions: 57
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)