Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_A02
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 30 0.72
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616 29 1.7
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 27 3.8
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856... 27 3.8
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809... 27 6.7
02_04_0346 - 22183145-22183264,22183877-22183966,22184140-221842... 27 6.7
08_02_0785 + 21190002-21190253,21190452-21190523,21191498-211916... 26 8.9
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 26 8.9
03_06_0322 + 33114988-33115130,33116972-33117024,33117432-331177... 26 8.9
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 29.9 bits (64), Expect = 0.72
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 142 CVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHREGG 29
C + ++ GCR Q G + FC+L ++ + EH G
Sbjct: 25 CSSASTAAGCRFFQDGGWRPFCMLTSSSRGHAEHHRNG 62
>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
Length = 695
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 118 QDCYLQQHSSCATTRSSAYTHTDXXXXXXXXXXXAHLPDHL 240
++C+ ++ S A + S + HTD A++PDHL
Sbjct: 365 KECFTEEDSENARQKQS-FNHTDMVFSGLGNSNRAYMPDHL 404
>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 190 NNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFC 77
++LC C C E H C E ++ Q+C + FC
Sbjct: 1003 SSLCTCSQCEEKYHPGCSPETTNTSNVSSQACDL--FC 1038
>03_05_0351 -
23382786-23382821,23383373-23383634,23384369-23385675,
23385776-23386290,23386379-23386741,23386916-23387284,
23387365-23388057,23388152-23388238,23388354-23388612
Length = 1296
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +1
Query: 55 QSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 159
+S+H ++H + D+PC+Q L+ C+++
Sbjct: 229 RSAHLARHNELYATRRDKPCAQSIALECPEDCSSS 263
>07_03_1696 -
28779455-28779733,28779813-28780074,28780805-28780956,
28781765-28781961,28782258-28782462,28782737-28782982,
28783603-28783719,28784206-28784397,28784480-28784693,
28784835-28784926,28784952-28785001,28785494-28785812,
28785908-28786068,28786407-28786650,28787212-28787467,
28787634-28787834,28788568-28788910,28789003-28789064,
28789645-28789851,28790170-28790978
Length = 1535
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = -3
Query: 175 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHREGGDRH 20
C C W H SCV D G + +G T +K R+ DRH
Sbjct: 425 CDICDAWQHASCVGYSPKEEMHVDDDDGDEASNNEKG-TLKSKNRRKKKDRH 475
>02_04_0346 -
22183145-22183264,22183877-22183966,22184140-22184220,
22184430-22184589,22184723-22184787,22185370-22185441,
22186163-22186327
Length = 250
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = -3
Query: 196 NWNNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHRE 35
N + C C +++H+ CV + +GD C I H G T + H +
Sbjct: 43 NLESPCACSGSLKYAHRECVQRWCNE--KGDIICEICHVSYKPGYTAPPQVHHD 94
>08_02_0785 +
21190002-21190253,21190452-21190523,21191498-21191631,
21191700-21191850,21191938-21192087
Length = 252
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 196 NWNNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEH 41
N + C C +++H++CV +GD +C I H G T + H
Sbjct: 72 NLESPCACTGSLKYAHRACVQRWCDE--KGDLTCEICHEPYKHGYTALPRAH 121
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 160 EWSHKSCVAEDSSPGCRGDQSCGI-QHFCVLRGATTDNKEHREGGDRHLEC 11
EW H SC E + ++ CGI Q R + + + GDR +C
Sbjct: 185 EWPHTSCSMECHTDWGDEEEDCGIAQWEAPPRFRLSRRRSEEDEGDRCRDC 235
>03_06_0322 +
33114988-33115130,33116972-33117024,33117432-33117780,
33118450-33118518,33119015-33119150,33120048-33120080
Length = 260
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 196 NWNNLCV-CRHCCEWSHKSCV 137
N +NL + C C +W H SCV
Sbjct: 191 NPDNLMIQCEDCSDWFHPSCV 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,284,264
Number of Sequences: 37544
Number of extensions: 188425
Number of successful extensions: 572
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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