Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A01
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   1.8  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   5.5  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    24   7.2  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    24   9.5  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 65  FLKLKLCFSHHTRPVA-VTLYCSRAT*VNVRYTFIHWILDTI 187
           F   +LC ++H +PV   T   +RA+ +++R  F   I  T+
Sbjct: 323 FYNFELCLAYHAKPVEDATSTSARASNLHLRIVFYPGIKGTV 364


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 155 YTFIHWILDTIMKSFLTT*YTKYM*IGFCVIIYRNCLRHYVHLYCPRAA 301
           YT++HWI+ T +   LT            ++I+  CL + +  Y  RAA
Sbjct: 473 YTYVHWIVPT-LSGLLTG--------AGILLIFLQCLNYLLDAYLFRAA 512


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 155 YTFIHWILDTIMKSFL 202
           Y +IHWI+ T+  SF+
Sbjct: 409 YPWIHWIVPTLAGSFI 424


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 148 CEVHFYTLDT*YHHEVIFDNLVH 216
           CE HF   DT YH   +  +++H
Sbjct: 53  CEDHFLESDTYYHSWEMLCSIIH 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,508,893
Number of Sequences: 5004
Number of extensions: 29430
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)