Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_A01
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   3.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   5.0  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 58  SYLFKIEIVFFTSH*TSGRHTL 123
           S L   E+ +FT+H T  RH L
Sbjct: 156 SLLVVAEVCYFTAHVTHPRHRL 177


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -3

Query: 340 SNNYVGL-VQWSSNCGPWT 287
           + +YV L  +WSS   PWT
Sbjct: 381 NGDYVVLETEWSSFINPWT 399


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -3

Query: 340 SNNYVGL-VQWSSNCGPWT 287
           + +YV L  +WSS   PWT
Sbjct: 87  NGDYVVLETEWSSFINPWT 105


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 4/13 (30%), Positives = 9/13 (69%)
 Frame = -3

Query: 328 VGLVQWSSNCGPW 290
           +G++ W + CG +
Sbjct: 366 IGIISWGAECGKY 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,008
Number of Sequences: 438
Number of extensions: 2188
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)