Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P24
         (151 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   0.25 
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   0.34 
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    27   0.34 
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    24   3.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    23   4.1  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    23   4.1  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    23   4.1  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    23   4.1  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    23   4.1  
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   7.2  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    23   7.2  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    23   7.2  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    23   7.2  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    23   7.2  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    22   9.6  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    22   9.6  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 9   RAAGIRHEGKKELEERRLQPPKKEDCNRRRK--KTATAEERRLQSPK 143
           RAA  R   ++  E +RL+   KE+   ++K  K   AEE+RLQ  +
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKER 754


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 17  RNSARGEEGAGRKKTATAEERRLQPPKKED-CNRRRKKTAIAEERR 151
           ++SA+  +G GR K    E+R  +   KED   +R+ K    E++R
Sbjct: 467 KSSAKQGKGNGRAKETPEEKRARKKKTKEDKAEKRKSKIPKYEKKR 512


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 11  GCRNSARGEEGAGRKKTATAEERRLQPPKKEDCNRRRKKTAIA 139
           G +++A+G  G   K +   ++    PPK+      +K T  A
Sbjct: 137 GVKSTAKGSAGNHEKNSVNGQKNPEMPPKRRKTEENKKPTKSA 179


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 29  RGEEGAGRKKTATAEERRLQPPKKE 103
           +GE    +KKT+T +E  LQ   K+
Sbjct: 155 QGESQTDKKKTSTVQEEELQNAGKK 179


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +2

Query: 5   PPGCRNSARGEEGAGRKKTATAEERRLQPPKKEDCNRRRKKTAIAEER 148
           PP    + RG  G     +     RR+  P+KE  N   ++  +  E+
Sbjct: 567 PPTNMATERGVVGRRASMSIAVNARRVSKPEKEHTNPNAEQGDVIPEK 614


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 21  IRHEGKKELEERRLQPPKKEDCNRRRKKTATAE 119
           I  E   +LEE+RLQ    E   ++R ++A  E
Sbjct: 6   IAEENDLDLEEKRLQRQLNEIQEKKRLRSAQKE 38


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 39  KELEERRLQPPKKEDCNRRRKKTATAEERRLQS 137
           K  EE+ L    KEDC    +K      + LQS
Sbjct: 63  KPNEEKELPKDIKEDCKTVEEKEKVVPRKPLQS 95


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 36  KKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKKE 149
           KKE +ER+ +  KKE   + +KK    E  +   P +E
Sbjct: 283 KKEEKERKKRAEKKEQ-QKEKKKEKEKERMKAFIPPEE 319



 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 31  RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRR 144
           R +R+ KKE    ++K+      +   PP++    R+R
Sbjct: 289 RKKRAEKKEQQKEKKKEKEKERMKAFIPPEESSKKRKR 326


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 21  IRHEGKKELEERRLQPPKKEDCNRRRKKTATA 116
           +RHE  +E EER+L P ++++   R+K   +A
Sbjct: 366 LRHE--RENEERKLTPEERKEKAFRKKDEDSA 395


>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 112

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 17  RNSARGEEGAGRKKTATAEERRLQPPKKEDCNRRRKK 127
           +N    E+G  R+K    +ER  +P K     +R K+
Sbjct: 18  KNPNANEDGYFRRKRLAKKERPFEPKKLVQQQQRLKE 54


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 68  AEERRLQPPKKEDCNRRRKKT 130
           A+  R  PP   D NRRR+K+
Sbjct: 80  AQYFRPAPPHPNDRNRRRRKS 100



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 91  AEERRLQPPKKEDCNRRRKK 150
           A+  R  PP   D NRRR+K
Sbjct: 80  AQYFRPAPPHPNDRNRRRRK 99



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 57  RLQPPKKEDCNRRRKKT 107
           R  PP   D NRRR+K+
Sbjct: 84  RPAPPHPNDRNRRRRKS 100


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 49  KKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
           KKE  +++ KK   ++++R      E+  + +KK
Sbjct: 460 KKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKK 493


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 50  RKKTATAEERRLQPPKKEDCNRRRKKTAIAE 142
           ++K  T + +   P  +ED + R KKT IA+
Sbjct: 486 KEKKPTKDLQSPLPSVEEDSSNRDKKTDIAD 516


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 11  GCRNSARGEEGAGRKKTATAEERRLQPP 94
           GC N+  GE G    +  TAE   L  P
Sbjct: 103 GCANAVTGEGGLMDAQLITAEADNLTRP 130


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 64  NRRRKKTATAEERRLQPPKKE-DCNRRRKK 150
           +R R+  A AEE RL   K+E +  +++KK
Sbjct: 278 DRERQAFARAEEERLAKEKEEREIVQKKKK 307


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 2   DPPGCRNSARGEEGAGRKKTATAEERRLQPPKKEDCNRRRKKT 130
           + P   NS  G+     KK++ A         KED    RKK+
Sbjct: 186 EKPASNNSKAGKSSQESKKSSKAPAESAAAVIKEDKVSDRKKS 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,351
Number of Sequences: 5004
Number of extensions: 6855
Number of successful extensions: 39
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 30
effective length of database: 2,212,358
effective search space used: 42034802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)