Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P24
(151 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and pol... 33 0.16
BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and pol... 33 0.16
AF046935-1|AAC03107.1| 725|Homo sapiens PCF11p homolog protein. 33 0.16
AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein. 33 0.16
L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein. 30 1.1
AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein. 30 1.1
BC039294-1|AAH39294.1| 589|Homo sapiens ubiquilin 1 protein. 29 2.6
BC034980-1|AAH34980.1| 603|Homo sapiens Unknown (protein for IM... 29 2.6
BC010066-1|AAH10066.1| 561|Homo sapiens ubiquilin 1 protein. 29 2.6
BC009449-1|AAH09449.1| 569|Homo sapiens MGC2641 protein protein. 29 2.6
BC000755-1|AAH00755.1| 670|Homo sapiens hepatoma-derived growth... 29 2.6
AY358600-1|AAQ88963.1| 671|Homo sapiens HGDF-related pro 2 prot... 29 2.6
AL354920-5|CAI15101.1| 589|Homo sapiens ubiquilin 1 protein. 29 2.6
AL354920-4|CAI15100.1| 561|Homo sapiens ubiquilin 1 protein. 29 2.6
AK074535-1|BAC11045.1| 316|Homo sapiens protein ( Homo sapiens ... 29 2.6
AF294267-1|AAP97281.1| 671|Homo sapiens hepatoma-derived growth... 29 2.6
AF293384-1|AAG02473.1| 589|Homo sapiens PLIC-1 protein. 29 2.6
AF176069-1|AAD49751.3| 589|Homo sapiens ubiquilin protein. 29 2.6
AB208892-1|BAD92129.1| 472|Homo sapiens hepatoma-derived growth... 29 2.6
AB035275-1|BAB20436.1| 589|Homo sapiens DA41 protein. 29 2.6
BC130632-1|AAI30633.1| 1314|Homo sapiens ring finger protein 123... 29 3.5
BC057392-1|AAH57392.2| 925|Homo sapiens RNF123 protein protein. 29 3.5
BC041145-1|AAH41145.1| 873|Homo sapiens RNF123 protein protein. 29 3.5
BC013372-1|AAH13372.2| 185|Homo sapiens DEDD2 protein protein. 29 3.5
AY744152-1|AAU93470.1| 1314|Homo sapiens ubiquitin ligase protein. 29 3.5
AY125488-1|AAM95240.1| 321|Homo sapiens death effector domain-c... 29 3.5
X76302-1|CAA53949.1| 163|Homo sapiens nucleic acid binding prot... 28 4.6
BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein. 28 4.6
BC017890-1|AAH17890.1| 155|Homo sapiens putative nucleic acid b... 28 4.6
AC019206-3|AAY14866.1| 155|Homo sapiens unknown protein. 28 4.6
BC067345-1|AAH67345.1| 263|Homo sapiens hypothetical protein LO... 28 6.1
AF258593-1|AAG23796.1| 263|Homo sapiens PP905 protein. 28 6.1
X99717-1|CAA68053.1| 754|Homo sapiens SRcyp protein protein. 27 8.0
X84841-1|CAA59278.1| 437|Homo sapiens 68 kDa (U1) ribonucleopro... 27 8.0
X07401-1|CAA30303.1| 285|Homo sapiens hU1-70K protein (286 AA) ... 27 8.0
X06814-1|CAA29963.1| 233|Homo sapiens protein ( Human mRNA for ... 27 8.0
X06812-1|CAA29961.1| 301|Homo sapiens protein ( Human mRNA for ... 27 8.0
X04654-1|CAA28352.1| 614|Homo sapiens protein ( Human mRNA for ... 27 8.0
U40763-1|AAB40347.1| 754|Homo sapiens CARS-Cyp protein. 27 8.0
M57939-2|AAA36573.1| 428|Homo sapiens ribonucleoprotein antigen... 27 8.0
M57939-1|AAA36572.1| 437|Homo sapiens ribonucleoprotein antigen... 27 8.0
M22636-1|AAA03001.1| 437|Homo sapiens protein ( Human U1 small ... 27 8.0
BC150196-1|AAI50197.1| 726|Homo sapiens Unknown (protein for IM... 27 8.0
BC139918-1|AAI39919.1| 726|Homo sapiens MAP1B protein protein. 27 8.0
BC115737-1|AAI15738.1| 1272|Homo sapiens UPF2 regulator of nonse... 27 8.0
BC114964-1|AAI14965.1| 1272|Homo sapiens UPF2 regulator of nonse... 27 8.0
BC111693-1|AAI11694.1| 739|Homo sapiens PPIG protein protein. 27 8.0
BC090919-1|AAH90919.1| 109|Homo sapiens UPF2 protein protein. 27 8.0
BC030973-1|AAH30973.1| 392|Homo sapiens UBE4A protein protein. 27 8.0
BC001315-1|AAH01315.1| 437|Homo sapiens small nuclear ribonucle... 27 8.0
AY013249-1|AAG48509.1| 1272|Homo sapiens hUPF2 protein. 27 8.0
AL645617-2|CAI16756.1| 579|Homo sapiens UPF2 regulator of nonse... 27 8.0
AL645617-1|CAI16755.1| 1272|Homo sapiens UPF2 regulator of nonse... 27 8.0
AL138898-5|CAH73459.1| 579|Homo sapiens UPF2 regulator of nonse... 27 8.0
AL138898-4|CAH73458.1| 1272|Homo sapiens UPF2 regulator of nonse... 27 8.0
AL117507-1|CAB55969.1| 341|Homo sapiens hypothetical protein pr... 27 8.0
AK096191-1|BAC04721.1| 579|Homo sapiens protein ( Homo sapiens ... 27 8.0
AF318574-1|AAG60689.1| 1272|Homo sapiens UPF2 protein. 27 8.0
AF301013-1|AAG33225.1| 1272|Homo sapiens regulator of nonsense t... 27 8.0
AC016772-2|AAY24233.1| 571|Homo sapiens unknown protein. 27 8.0
AB037829-1|BAA92646.1| 1298|Homo sapiens KIAA1408 protein protein. 27 8.0
>BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 6 PRAAGIRHEGKKELEERRLQPPKKEDCNRRRK-KTATAEERRLQSPKKE 149
P+A IR G K+ PP +ED N +R K + RR++ ++E
Sbjct: 516 PKAGKIRQSGAKQSHMEEFTPPSREDRNAKRSTKQDIRDPRRMKKTEEE 564
>BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 6 PRAAGIRHEGKKELEERRLQPPKKEDCNRRRK-KTATAEERRLQSPKKE 149
P+A IR G K+ PP +ED N +R K + RR++ ++E
Sbjct: 516 PKAGKIRQSGAKQSHMEEFTPPSREDRNAKRSTKQDIRDPRRMKKTEEE 564
>AF046935-1|AAC03107.1| 725|Homo sapiens PCF11p homolog protein.
Length = 725
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 6 PRAAGIRHEGKKELEERRLQPPKKEDCNRRRK-KTATAEERRLQSPKKE 149
P+A IR G K+ PP +ED N +R K + RR++ ++E
Sbjct: 516 PKAGKIRQSGAKQSHMEEFTPPSREDRNAKRSTKQDIRDPRRMKKTEEE 564
>AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein.
Length = 1644
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 6 PRAAGIRHEGKKELEERRLQPPKKEDCNRRRK-KTATAEERRLQSPKKE 149
P+A IR G K+ PP +ED N +R K + RR++ ++E
Sbjct: 605 PKAGKIRQSGAKQSHMEEFTPPSREDRNAKRSTKQDIRDPRRMKKTEEE 653
>L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein.
Length = 1898
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 24 RHEGKKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKKE 149
R E K+ +ERR Q K+E RR + EERR Q K+E
Sbjct: 571 REEEKRLEQERREQRLKREQEERRDQLLKREEERRQQRLKRE 612
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 36 KKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKKE 149
K+E EERR Q K+E+ R+++ EER Q K+E
Sbjct: 587 KREQEERRDQLLKREEERRQQRLKREQEERLEQRLKRE 624
>AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.
Length = 1943
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 24 RHEGKKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKKE 149
R E K+ +ERR Q K+E RR + EERR Q K+E
Sbjct: 552 REEEKRLEQERREQRLKREQEERRDQLLKREEERRQQRLKRE 593
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 36 KKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKKE 149
K+E EERR Q K+E+ R+++ EER Q K+E
Sbjct: 568 KREQEERRDQLLKREEERRQQRLKREQEERLEQRLKRE 605
>BC039294-1|AAH39294.1| 589|Homo sapiens ubiquilin 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 5 PPGCRNSARGEEGAGRKKTATAEERRL 85
PPG ++SA G EGAG A + E ++
Sbjct: 10 PPGSQDSAAGAEGAGTPAAAASAEPKI 36
>BC034980-1|AAH34980.1| 603|Homo sapiens Unknown (protein for
IMAGE:4824581) protein.
Length = 603
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 1 GSPGLQEFGTRGRRSWKKEDCNRRRKKTATAEERRLQPPKK-EDCNRRR 144
GSP Q +R R K D +R R + R + P K DC+R R
Sbjct: 401 GSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSR 449
>BC010066-1|AAH10066.1| 561|Homo sapiens ubiquilin 1 protein.
Length = 561
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 5 PPGCRNSARGEEGAGRKKTATAEERRL 85
PPG ++SA G EGAG A + E ++
Sbjct: 10 PPGSQDSAAGAEGAGAPAAAASAEPKI 36
>BC009449-1|AAH09449.1| 569|Homo sapiens MGC2641 protein protein.
Length = 569
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 17 RNSARGEEGAGRKKTATAEE-RRLQPPKKEDCNRRRKKTAIAEERR 151
R+ AR E R++ EE RRL+ +KE+ RRR++ E R
Sbjct: 217 RDEARRRELEARRRREQEEELRRLREQEKEEKERRRERADRGEAER 262
>BC000755-1|AAH00755.1| 670|Homo sapiens hepatoma-derived growth
factor-related protein 2 protein.
Length = 670
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 17 RNSARGEEGAGRKKTATAEE-RRLQPPKKEDCNRRRKKTAIAEERR 151
R+ AR E R++ EE RRL+ +KE+ RRR++ E R
Sbjct: 319 RDEARRRELEARRRREQEEELRRLREQEKEEKERRRERADRGEAER 364
>AY358600-1|AAQ88963.1| 671|Homo sapiens HGDF-related pro 2
protein.
Length = 671
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 17 RNSARGEEGAGRKKTATAEE-RRLQPPKKEDCNRRRKKTAIAEERR 151
R+ AR E R++ EE RRL+ +KE+ RRR++ E R
Sbjct: 319 RDEARRRELEARRRREQEEELRRLREQEKEEKERRRERADRGEAER 364
>AL354920-5|CAI15101.1| 589|Homo sapiens ubiquilin 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 5 PPGCRNSARGEEGAGRKKTATAEERRL 85
PPG ++SA G EGAG A + E ++
Sbjct: 10 PPGSQDSAAGAEGAGAPAAAASAEPKI 36
>AL354920-4|CAI15100.1| 561|Homo sapiens ubiquilin 1 protein.
Length = 561
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 5 PPGCRNSARGEEGAGRKKTATAEERRL 85
PPG ++SA G EGAG A + E ++
Sbjct: 10 PPGSQDSAAGAEGAGAPAAAASAEPKI 36
>AK074535-1|BAC11045.1| 316|Homo sapiens protein ( Homo sapiens
cDNA FLJ90054 fis, clone HEMBA1002992, weakly similar
to UBIQUITIN-LIKE PROTEIN DSK2. ).
Length = 316
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 5 PPGCRNSARGEEGAGRKKTATAEERRL 85
PPG ++SA G EGAG A + E ++
Sbjct: 10 PPGSQDSAAGAEGAGAPAAAASAEPKI 36
>AF294267-1|AAP97281.1| 671|Homo sapiens hepatoma-derived growth
factor 2 protein.
Length = 671
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 17 RNSARGEEGAGRKKTATAEE-RRLQPPKKEDCNRRRKKTAIAEERR 151
R+ AR E R++ EE RRL+ +KE+ RRR++ E R
Sbjct: 319 RDEARRRELEARRRREQEEELRRLREQEKEEKERRRERADRGEAER 364
>AF293384-1|AAG02473.1| 589|Homo sapiens PLIC-1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 5 PPGCRNSARGEEGAGRKKTATAEERRL 85
PPG ++SA G EGAG A + E ++
Sbjct: 10 PPGSQDSAAGAEGAGAPAAAASAEPKI 36
>AF176069-1|AAD49751.3| 589|Homo sapiens ubiquilin protein.
Length = 589
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 5 PPGCRNSARGEEGAGRKKTATAEERRL 85
PPG ++SA G EGAG A + E ++
Sbjct: 10 PPGSQDSAAGAEGAGAPAAAASAEPKI 36
>AB208892-1|BAD92129.1| 472|Homo sapiens hepatoma-derived growth
factor-related protein 2 isoform 1 variant protein.
Length = 472
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 17 RNSARGEEGAGRKKTATAEE-RRLQPPKKEDCNRRRKKTAIAEERR 151
R+ AR E R++ EE RRL+ +KE+ RRR++ E R
Sbjct: 270 RDEARRRELEARRRREQEEELRRLREQEKEEKERRRERADRGEAER 315
>AB035275-1|BAB20436.1| 589|Homo sapiens DA41 protein.
Length = 589
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 5 PPGCRNSARGEEGAGRKKTATAEERRL 85
PPG ++SA G EGAG A + E ++
Sbjct: 10 PPGSQDSAAGAEGAGAPAAAASAEPKI 36
>BC130632-1|AAI30633.1| 1314|Homo sapiens ring finger protein 123
protein.
Length = 1314
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 8 PGCRNSARGEEGAGRKKTATAEERRLQPPKKEDCNRRRKKTAIAEE 145
P C +S G+E K+ TAEER + + C R RK+ + EE
Sbjct: 459 PHC-SSREGKESTEMKEE-TAEERLRRRAYERGCQRLRKRIEVVEE 502
>BC057392-1|AAH57392.2| 925|Homo sapiens RNF123 protein protein.
Length = 925
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 8 PGCRNSARGEEGAGRKKTATAEERRLQPPKKEDCNRRRKKTAIAEE 145
P C +S G+E K+ TAEER + + C R RK+ + EE
Sbjct: 70 PHC-SSREGKESTEMKEE-TAEERLRRRAYERGCQRLRKRIEVVEE 113
>BC041145-1|AAH41145.1| 873|Homo sapiens RNF123 protein protein.
Length = 873
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 8 PGCRNSARGEEGAGRKKTATAEERRLQPPKKEDCNRRRKKTAIAEE 145
P C +S G+E K+ TAEER + + C R RK+ + EE
Sbjct: 18 PHC-SSREGKESTEMKEE-TAEERLRRRAYERGCQRLRKRIEVVEE 61
>BC013372-1|AAH13372.2| 185|Homo sapiens DEDD2 protein protein.
Length = 185
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 4 SPGLQEFGTRGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRR 141
SP +GT + C RRR+ +++A ++ PP K R
Sbjct: 111 SPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGSPPTKRQRRSR 156
>AY744152-1|AAU93470.1| 1314|Homo sapiens ubiquitin ligase protein.
Length = 1314
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 8 PGCRNSARGEEGAGRKKTATAEERRLQPPKKEDCNRRRKKTAIAEE 145
P C +S G+E K+ TAEER + + C R RK+ + EE
Sbjct: 459 PHC-SSREGKESTEMKEE-TAEERLRRRAYERGCQRLRKRIEVVEE 502
>AY125488-1|AAM95240.1| 321|Homo sapiens death effector
domain-containing DNA-binding 2 protein protein.
Length = 321
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 4 SPGLQEFGTRGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRR 141
SP +GT + C RRR+ +++A ++ PP K R
Sbjct: 111 SPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGSPPTKRQRRSR 156
>X76302-1|CAA53949.1| 163|Homo sapiens nucleic acid binding protein
protein.
Length = 163
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 39 KELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKK 146
+E E RR + + + +RRR ++ + RR +SP++
Sbjct: 29 RERERRRRERSRSRERDRRRSRSRSPHRRRSRSPRR 64
>BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein.
Length = 1937
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 6 PRAAGIRHEGKKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKK 146
P +AG E L L PP ED +T T + ++ + PKK
Sbjct: 10 PCSAGSEEEDMDALLNNSLPPPHPEDPEEDLSETETPKLKKKKKPKK 56
>BC017890-1|AAH17890.1| 155|Homo sapiens putative nucleic acid
binding protein RY-1 protein.
Length = 155
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 39 KELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKK 146
+E E RR + + + +RRR ++ + RR +SP++
Sbjct: 21 RERERRRRERSRSRERDRRRSRSRSPHRRRSRSPRR 56
>AC019206-3|AAY14866.1| 155|Homo sapiens unknown protein.
Length = 155
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 39 KELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKK 146
+E E RR + + + +RRR ++ + RR +SP++
Sbjct: 21 RERERRRRERSRSRERDRRRSRSRSPHRRRSRSPRR 56
>BC067345-1|AAH67345.1| 263|Homo sapiens hypothetical protein
LOC201175 protein.
Length = 263
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 11 GCRNSARGEEGAGRKKTATAEERRLQPPKKED 106
G R R GRK+T +A+ R +PP ED
Sbjct: 230 GWRARDRARTEPGRKETRSAQRRARRPPLSED 261
>AF258593-1|AAG23796.1| 263|Homo sapiens PP905 protein.
Length = 263
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 11 GCRNSARGEEGAGRKKTATAEERRLQPPKKED 106
G R R GRK+T +A+ R +PP ED
Sbjct: 230 GWRARDRARTEPGRKETRSAQRRARRPPLSED 261
>X99717-1|CAA68053.1| 754|Homo sapiens SRcyp protein protein.
Length = 754
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 24 RHEGKKELEERRLQP--PKKEDCNRRRKKTATAEERRLQSPKKE 149
R G+ ERR P + +D RRR+ + ++E QS K+
Sbjct: 599 RRRGRSRSRERRTPPGRSRSKDRRRRRRDSRSSEREESQSRNKD 642
>X84841-1|CAA59278.1| 437|Homo sapiens 68 kDa (U1)
ribonucleoprotein protein.
Length = 437
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 31 RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
R RR + D RRR ++ EERR + +D +R RK+
Sbjct: 252 RERRRSRSRD-RRRRSRSRDKEERRRSRERSKDKDRDRKR 290
>X07401-1|CAA30303.1| 285|Homo sapiens hU1-70K protein (286 AA)
protein.
Length = 285
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 31 RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
R RR + D RRR ++ EERR + +D +R RK+
Sbjct: 100 RERRRSRSRD-RRRRSRSRDKEERRRSRERSKDKDRDRKR 138
>X06814-1|CAA29963.1| 233|Homo sapiens protein ( Human mRNA for
hU1-70K small nuclear RNP protein (RNP12). ).
Length = 233
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 31 RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
R RR + D RRR ++ EERR + +D +R RK+
Sbjct: 67 RERRRSRSRD-RRRRSRSRDKEERRRSRERSKDKDRDRKR 105
>X06812-1|CAA29961.1| 301|Homo sapiens protein ( Human mRNA for
hU1-70K snRNP protein (RNP8). ).
Length = 301
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 31 RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
R RR + D RRR ++ EERR + +D +R RK+
Sbjct: 203 RERRRSRSRD-RRRRSRSRDKEERRRSRERSKDKDRDRKR 241
>X04654-1|CAA28352.1| 614|Homo sapiens protein ( Human mRNA for U1
RNA-associated 70K protein. ).
Length = 614
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 31 RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
R RR + D RRR ++ EERR + +D +R RK+
Sbjct: 429 RERRRSRSRD-RRRRSRSRDKEERRRSRERSKDKDRDRKR 467
>U40763-1|AAB40347.1| 754|Homo sapiens CARS-Cyp protein.
Length = 754
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 24 RHEGKKELEERRLQP--PKKEDCNRRRKKTATAEERRLQSPKKE 149
R G+ ERR P + +D RRR+ + ++E QS K+
Sbjct: 599 RRRGRSRSRERRTPPGRSRSKDRRRRRRDSRSSEREESQSRNKD 642
>M57939-2|AAA36573.1| 428|Homo sapiens ribonucleoprotein antigen
protein.
Length = 428
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 31 RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
R RR + D RRR ++ EERR + +D +R RK+
Sbjct: 243 RERRRSRSRD-RRRRSRSRDKEERRRSRERSKDKDRDRKR 281
>M57939-1|AAA36572.1| 437|Homo sapiens ribonucleoprotein antigen
protein.
Length = 437
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 31 RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
R RR + D RRR ++ EERR + +D +R RK+
Sbjct: 252 RERRRSRSRD-RRRRSRSRDKEERRRSRERSKDKDRDRKR 290
>M22636-1|AAA03001.1| 437|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein 70 kd protein mRNA, complete
cds. ).
Length = 437
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 31 RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
R RR + D RRR ++ EERR + +D +R RK+
Sbjct: 252 RERRRSRSRD-RRRRSRSRDKEERRRSRERSKDKDRDRKR 290
>BC150196-1|AAI50197.1| 726|Homo sapiens Unknown (protein for
IMAGE:40148774) protein.
Length = 726
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 6 PRAAGIRHEGKKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKKE 149
P+ ++ E KKE+++ + PKKE K E ++ + KK+
Sbjct: 675 PKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKKKK 722
>BC139918-1|AAI39919.1| 726|Homo sapiens MAP1B protein protein.
Length = 726
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 6 PRAAGIRHEGKKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPKKE 149
P+ ++ E KKE+++ + PKKE K E ++ + KK+
Sbjct: 675 PKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKKKK 722
>BC115737-1|AAI15738.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>BC114964-1|AAI14965.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>BC111693-1|AAI11694.1| 739|Homo sapiens PPIG protein protein.
Length = 739
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 24 RHEGKKELEERRLQP--PKKEDCNRRRKKTATAEERRLQSPKKE 149
R G+ ERR P + +D RRR+ + ++E QS K+
Sbjct: 584 RRRGRSRSRERRTPPGRSRSKDRRRRRRDSRSSEREESQSRNKD 627
>BC090919-1|AAH90919.1| 109|Homo sapiens UPF2 protein protein.
Length = 109
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>BC030973-1|AAH30973.1| 392|Homo sapiens UBE4A protein protein.
Length = 392
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/49 (22%), Positives = 29/49 (59%)
Frame = +1
Query: 4 SPGLQEFGTRGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
+PG+ E + ++ KK+ +++KK ++++ + KK+ +++KK
Sbjct: 342 TPGVVEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 390
>BC001315-1|AAH01315.1| 437|Homo sapiens small nuclear
ribonucleoprotein 70kDa polypeptide (RNP antigen)
protein.
Length = 437
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 31 RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
R RR + D RRR ++ EERR + +D +R RK+
Sbjct: 252 RERRRSRSRD-RRRRSRSRDKEERRRSRERSKDKDRDRKR 290
>AY013249-1|AAG48509.1| 1272|Homo sapiens hUPF2 protein.
Length = 1272
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>AL645617-2|CAI16756.1| 579|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 579
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>AL645617-1|CAI16755.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>AL138898-5|CAH73459.1| 579|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 579
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>AL138898-4|CAH73458.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>AL117507-1|CAB55969.1| 341|Homo sapiens hypothetical protein
protein.
Length = 341
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 31 RGRRSWKKEDCNRRRKKTATAEERRLQPPKKEDCNRRRKK 150
R RR + D RRR ++ EERR + +D +R RK+
Sbjct: 156 RERRRSRSRD-RRRRSRSRDKEERRRSRERSKDKDRDRKR 194
>AK096191-1|BAC04721.1| 579|Homo sapiens protein ( Homo sapiens
cDNA FLJ38872 fis, clone MESAN2013674, highly similar to
Homo sapiens regulator of nonsense transcripts 2 (RENT2)
mRNA. ).
Length = 579
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>AF318574-1|AAG60689.1| 1272|Homo sapiens UPF2 protein.
Length = 1272
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>AF301013-1|AAG33225.1| 1272|Homo sapiens regulator of nonsense
transcripts 2 protein.
Length = 1272
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 3 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 36
>AC016772-2|AAY24233.1| 571|Homo sapiens unknown protein.
Length = 571
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 24 RHEGKKELEERRLQP--PKKEDCNRRRKKTATAEERRLQSPKKE 149
R G+ ERR P + +D RRR+ + ++E QS K+
Sbjct: 416 RRRGRSRSRERRTPPGRSRSKDRRRRRRDSRSSEREESQSRNKD 459
>AB037829-1|BAA92646.1| 1298|Homo sapiens KIAA1408 protein protein.
Length = 1298
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 44 AGRKKTATAEERRLQPPKKE-DCNRRRKKTAIAEER 148
A RKK A+ EE+ P KE DC+ RR T ++ER
Sbjct: 29 AERKKPASMEEKDSLPNNKEKDCSERR--TVSSKER 62
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.314 0.131 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,077,785
Number of Sequences: 237096
Number of extensions: 333021
Number of successful extensions: 2985
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 2089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2840
length of database: 76,859,062
effective HSP length: 30
effective length of database: 69,746,182
effective search space used: 1325177458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -