Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P23
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   0.78 
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    24   3.1  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    23   4.2  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    23   5.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    23   5.5  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    22   9.6  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    22   9.6  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    22   9.6  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    22   9.6  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    22   9.6  

>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 200 YKWNILGICKRVENCRTADKDNEHPTCCLVTHP*SRTR 87
           YK N   I KRV+N     +  +H  C LV    ++TR
Sbjct: 52  YKKNSSAIPKRVDNILLRSQKPKHIECLLVDSKITKTR 89


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 188  ILGICKRVENCRTADKD 138
            +LG CK++EN  T DK+
Sbjct: 1061 LLGECKQLENSITKDKE 1077


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 111 NKAAGWVFVVLISSSTVLHTFAY 179
           NK+  W+F +L+++S+ +    Y
Sbjct: 187 NKSENWMFFILLNASSAISMSLY 209


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 140 DNEHPTCCLVTH 105
           DNE P CC +T+
Sbjct: 287 DNETPNCCYLTY 298


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 112 LHILNLVPESISLKHCTHCLPRGIL 38
           L ILN+    + L+H  HC P   L
Sbjct: 662 LFILNVESPCLMLQHSYHCKPNSKL 686


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -2

Query: 135 RTPNLLPCYTSLI--SYQNRYH*NTVHTVYHE-VSCIF 31
           R PN L CYT L+  S  + Y   T+   Y   + CI+
Sbjct: 372 RQPNQLLCYTCLLVDSESSLYDRMTMLVAYRRAIRCIW 409


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 138 QRTPNLLPCYTSLISYQNRYH 76
           ++ PN  P YTSL  Y    H
Sbjct: 569 RKDPNYAPAYTSLGLYYRDIH 589


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 51  GKQCVQCFSDIDSGTRL 101
           G++C+ CF +  +G R+
Sbjct: 227 GQECIICFEEFAAGDRV 243


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 30  RRYKIPRGKQCVQCFS 77
           R  +I +GK+C+QC +
Sbjct: 237 RTIRIWKGKECLQCIT 252


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 135 VVLISSSTVLHTFAYPQNVPLISQA 209
           V  + S  ++HT   P+NV L+S A
Sbjct: 476 VAFLHSLGLVHTDLKPENVLLVSNA 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 971,779
Number of Sequences: 5004
Number of extensions: 17124
Number of successful extensions: 48
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)