Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P23
(214 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0179 + 2021977-2024890,2025117-2025610 27 1.6
01_01_0794 - 6184622-6185317 27 2.7
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 26 3.6
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 26 3.6
06_02_0172 + 12594542-12596083 26 3.6
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 26 4.8
01_05_0598 + 23548081-23548186,23548277-23549508,23549621-235496... 26 4.8
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922... 26 4.8
01_01_0795 - 6187518-6188219 26 4.8
02_04_0282 - 21569089-21569165,21569836-21569946,21570036-215701... 25 6.3
08_02_1052 - 23962374-23963369 25 8.3
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998... 25 8.3
01_05_0650 + 23925913-23926025,23926128-23926388,23927431-239274... 25 8.3
01_05_0098 - 18088331-18088376,18088703-18088935,18089078-180892... 25 8.3
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 124 PAALLHILNLVPESISLKHCTHCLPRGILYLLHL*KRVFL 5
PA+L + NL +S H T +P GI L +L K + L
Sbjct: 394 PASLAGLANLQALDLSHNHLTGAIPPGIFLLRNLTKLLLL 433
>01_01_0794 - 6184622-6185317
Length = 231
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 130 CSLSLSAVRQFSTRLHIPKMFHLYHR 207
CS+ L AV +P+ HL+HR
Sbjct: 143 CSICLCAVADGEVARQLPRCMHLFHR 168
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 115 LLHILNLVPESISLKHCTHCLP 50
+LHIL+ +PE++S++ + LP
Sbjct: 613 ILHILSAIPETVSVQSYSQLLP 634
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 135 RTPNLLPCYTSLISYQNRYH*NTVHTVYHEVSCIFFTC 22
R LL C S++ Y +++H +HT + + +FF C
Sbjct: 556 RVKYLLSCNLSILKYGHKFH-RCIHT-FGLLYSVFFNC 591
>06_02_0172 + 12594542-12596083
Length = 513
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 109 VTRQQVGCSLSLSAVRQFSTRLHIPKMFHLYH 204
VT +Q+GC L AV + + RLH P + H
Sbjct: 353 VTEEQLGCMPYLKAVIKETLRLHPPAPLLMPH 384
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -1
Query: 133 NTQPAALLHILNLVPESISLKHCTHCLPRGILYLLHL*KRVFL 5
N + ALLH LV + IS CT+ I Y++H RVFL
Sbjct: 445 NNEGQALLH--RLVAKGIS---CTYTHINAISYIMHEVTRVFL 482
>01_05_0598 +
23548081-23548186,23548277-23549508,23549621-23549652,
23549796-23550039
Length = 537
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 102 RMCNKAAGWVFVVLISSSTVLHTFAY 179
RMC + GW+ V+ SS T Y
Sbjct: 511 RMCGASKGWILVLASSSFTTFLVLLY 536
>01_01_1159 +
9224331-9224473,9224586-9224727,9225412-9225483,
9225853-9225933,9226031-9226144,9226770-9226826,
9227209-9227310,9227617-9227767,9227851-9227927,
9228721-9228828,9229684-9229754,9230546-9230687,
9230903-9231001,9231112-9231240,9231445-9231559,
9231786-9231853,9233410-9233523,9233587-9233703,
9234079-9234132,9234221-9234326,9235272-9235402,
9235489-9235557
Length = 753
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 36 YKIPRGKQCVQCFSDID 86
YK+ RGKQ C+ D D
Sbjct: 651 YKVERGKQAHYCYDDAD 667
>01_01_0795 - 6187518-6188219
Length = 233
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 124 VGCSLSLSAVRQFSTRLHIPKMFHLYHR 207
V C++ LSAV + T +P H++HR
Sbjct: 115 VECAVCLSAVDEGETVRQLPACGHVFHR 142
>02_04_0282 -
21569089-21569165,21569836-21569946,21570036-21570145,
21570222-21570347,21570433-21570520,21570602-21570722,
21570814-21570886,21571533-21571596,21572250-21572452,
21572557-21572615,21572710-21572809,21574001-21574110
Length = 413
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 200 YKWNILGICKRVENCRTADKDNEHPTC 120
+ W+ GICK VE + H TC
Sbjct: 367 FDWSCSGICKSVERIKEVHARCGHLTC 393
>08_02_1052 - 23962374-23963369
Length = 331
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 114 KAAGWVFVVLISSSTVLHTFAYPQNVPLISQAP 212
+ GWV ++L++ + A P+ + L++QAP
Sbjct: 7 RLVGWVLLLLLAVAIAGAAAATPRQLFLVTQAP 39
>02_02_0415 -
9981345-9981440,9981716-9981784,9982035-9982155,
9982441-9982622,9983320-9984921
Length = 689
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 151 LLIRTTNTQPAALLHILNLVPESISLKHCTHCLPRG 44
LL TT++ PAA L L L P S + +P+G
Sbjct: 16 LLPATTSSSPAASLRRLLLPPLSCHARQVLDVMPQG 51
>01_05_0650 +
23925913-23926025,23926128-23926388,23927431-23927449,
23927526-23927745,23927871-23928052,23928158-23928447,
23928621-23928750,23928888-23929235
Length = 520
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 99 LRMCNKAAGWVFVVLISSSTVLHTFAYPQNVPL 197
L C A GW V+ +++ TVL F+ P + P+
Sbjct: 450 LGRCGVAVGWAAVLWVATITVL--FSLPVSYPV 480
>01_05_0098 -
18088331-18088376,18088703-18088935,18089078-18089203,
18089387-18089494,18089646-18089709,18090256-18090409,
18090551-18090671,18091095-18091472
Length = 409
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 130 TQPAALLHILNLVPESISLKHCTHCLPR 47
T+ L H+L+ +P +S + H LPR
Sbjct: 140 TRDNLLNHVLSAMPRGLSREEWLHALPR 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,184,055
Number of Sequences: 37544
Number of extensions: 105961
Number of successful extensions: 268
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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