Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P23
         (214 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...    26   4.2  
AL110485-33|CAN86916.1|  360|Caenorhabditis elegans Hypothetical...    25   5.5  
AL110485-32|CAB60360.1|  375|Caenorhabditis elegans Hypothetical...    25   5.5  
Z83216-13|CAL63987.1|  126|Caenorhabditis elegans Hypothetical p...    25   7.3  
Z68115-7|CAA92169.2|  302|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z50873-4|CAA90762.2|  302|Caenorhabditis elegans Hypothetical pr...    25   7.3  
DQ645955-1|ABG36763.1|  302|Caenorhabditis elegans molting prote...    25   7.3  
AL031630-21|CAA20997.2|  736|Caenorhabditis elegans Hypothetical...    25   7.3  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z68014-2|CAA92024.1|  565|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p...    25   9.7  
U88180-4|ABI18143.1|  114|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF039711-1|AAB96712.1|  328|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 69  CFSDIDSGTRLRMCNKAAGWVF 134
           CF   DS   +  CN+A  W+F
Sbjct: 240 CFPATDSQEDIEACNRARDWLF 261


>AL110485-33|CAN86916.1|  360|Caenorhabditis elegans Hypothetical
           protein Y46G5A.18b protein.
          Length = 360

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 69  CFSDIDSGTRLRMCNKAAGWVFV 137
           CF  ID  +R+ +  K   W FV
Sbjct: 201 CFDRIDPKSRMALLGKKVNWAFV 223


>AL110485-32|CAB60360.1|  375|Caenorhabditis elegans Hypothetical
           protein Y46G5A.18a protein.
          Length = 375

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 69  CFSDIDSGTRLRMCNKAAGWVFV 137
           CF  ID  +R+ +  K   W FV
Sbjct: 201 CFDRIDPKSRMALLGKKVNWAFV 223


>Z83216-13|CAL63987.1|  126|Caenorhabditis elegans Hypothetical
           protein C08F11.17 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 66  QCFSDIDSGTRLRMCNKAAGWVF 134
           QCF D  +   L  C   A WVF
Sbjct: 37  QCFLDYSNDAYLYGCGVTASWVF 59


>Z68115-7|CAA92169.2|  302|Caenorhabditis elegans Hypothetical
           protein F19H6.1 protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 197 KWNILGICKRVENC 156
           K N+  +CK++ENC
Sbjct: 229 KMNLYSLCKKIENC 242


>Z50873-4|CAA90762.2|  302|Caenorhabditis elegans Hypothetical
           protein F19H6.1 protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 197 KWNILGICKRVENC 156
           K N+  +CK++ENC
Sbjct: 229 KMNLYSLCKKIENC 242


>DQ645955-1|ABG36763.1|  302|Caenorhabditis elegans molting protein
           MLT-1 protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 197 KWNILGICKRVENC 156
           K N+  +CK++ENC
Sbjct: 229 KMNLYSLCKKIENC 242


>AL031630-21|CAA20997.2|  736|Caenorhabditis elegans Hypothetical
           protein Y38H6C.20 protein.
          Length = 736

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 191 NILGICKRV--ENCRTADKDNEHPTCCLV 111
           N+   C+R+   +CR A K + HP C L+
Sbjct: 165 NVTFACERIIGADCRDAIKIDHHPVCNLM 193


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
           protein R09E10.7 protein.
          Length = 1717

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 145 IRTTNTQPAALLHILNLVPESISLKHCTHCLPR 47
           I T+  +  A+   ++ +PE I L    HC P+
Sbjct: 135 ICTSRAEKLAMPPPISTIPEKIFLSFIVHCFPQ 167


>Z68014-2|CAA92024.1|  565|Caenorhabditis elegans Hypothetical
           protein W04G3.2 protein.
          Length = 565

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 181 GYANVWRTVELLIRTTNTQPAALLHILNLVP 89
           GYA V    EL+ RT + +    +HIL++ P
Sbjct: 457 GYALVKGKGELIFRTNSNKEDVTVHILSVGP 487


>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
           protein F19F10.11a protein.
          Length = 1121

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 39  KIPRGKQCVQCFSDIDSGTRLRMC 110
           K+P    CVQC +    G R R C
Sbjct: 877 KVPVSTSCVQCGTPKHEGLRKREC 900


>U88180-4|ABI18143.1|  114|Caenorhabditis elegans Hypothetical
           protein T27A3.8 protein.
          Length = 114

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +3

Query: 123 GWVFVVLISSSTVLHTFAYP---QNVPLI 200
           G +  ++IS+  +LH F+Y    QN+P++
Sbjct: 67  GIIISIVISTKVLLHIFSYGTLFQNIPIL 95


>AF039711-1|AAB96712.1|  328|Caenorhabditis elegans Hypothetical
           protein F49D11.6 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 6/25 (24%), Positives = 18/25 (72%)
 Frame = -2

Query: 105 SLISYQNRYH*NTVHTVYHEVSCIF 31
           +++++   +H +++H +YH + C+F
Sbjct: 39  TVVNFSGGFH-SSIHQLYHTILCMF 62


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 RCPYQQFDSSPHVCISPKCST 196
           +C   Q++ +  VCI P CS+
Sbjct: 105 KCASHQYNFAEFVCIEPTCSS 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,474,490
Number of Sequences: 27780
Number of extensions: 98945
Number of successful extensions: 280
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)