Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P21
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   1.9  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   3.4  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.8  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 341 SNRPNSGQSTSRKLYLISKTG-RATERLLVRLFKKYWFRSDDS 216
           ++ P++ + +   L   SKT  R+++  L RLF   WF+++ S
Sbjct: 14  NSTPSNDKRSPSSLSQRSKTSTRSSKPFLQRLFPSTWFKNESS 56


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -1

Query: 280 DVRRNVYWSDY--SKNIGFV 227
           D+RR V+W  Y   K IGF+
Sbjct: 343 DIRRRVFWGSYVADKFIGFI 362


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 200  KKMMLQNRPNETNIF*IVGPVNVPSHVQ 283
            K+M+L  + N TN+F  +G   +P H Q
Sbjct: 1103 KRMLLDRKANVTNVFNTIG---LPIHQQ 1127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,256
Number of Sequences: 5004
Number of extensions: 20539
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)