Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P21
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0810 + 7429834-7429960,7430534-7430696,7430796-7430844,743...    27   3.1  

>12_01_0810 +
           7429834-7429960,7430534-7430696,7430796-7430844,
           7431203-7431385,7431824-7431898,7431963-7432148,
           7432362-7432450,7432892-7433444
          Length = 474

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 218 NRPNETNIF*IVGPVNVPSHVQFLRLGKVYEKWIDLNSDDL 340
           N P E      V P N PS  ++L +G +    + +N  DL
Sbjct: 270 NEPKEDMYMMSVAPENAPSKPEYLEIGIIAGVPVSINGKDL 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,959,749
Number of Sequences: 37544
Number of extensions: 99250
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)