Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P20
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.32 
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    27   0.74 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    24   9.1  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    24   9.1  

>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 28.7 bits (61), Expect = 0.32
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 204 ISAVQQNTLHKYTSYLTAYIL*SFPNPNLHPFIFEPHVI 88
           +SAVQ     K   ++   IL   P+P L P++F P V+
Sbjct: 80  LSAVQPYPYDKNLMFVYLVILTPLPHPMLIPYLFAPKVV 118


>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +1

Query: 181 SILLHGRYLKR*VTCDLDSPLLGNDF*KCP*LNQIMPVFKDNNLILRCFLYKNRNQRYGL 360
           SI++ GR+L    T   D  L GN F K P L  ++P+   +NL+++   Y + +  + L
Sbjct: 55  SIMIRGRFLPTESTLTADDILFGNQFEK-P-LRDVLPM--GSNLLMKGLQYVDPSIEFDL 110


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = +3

Query: 162 MTCIYVKYFVARPISKTIS 218
           +TC+++ YF++R ++ +IS
Sbjct: 158 ITCLWITYFLSRSVTYSIS 176


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 148 YSVIFSESEFTPLH 107
           YS  FSES+ +PLH
Sbjct: 778 YSECFSESQISPLH 791


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 278 FNYGHF*KSLPNNGESRSHVTYRFRYR 198
           F Y +  ++ P+  E R++  + +RYR
Sbjct: 294 FTYDYIEQNFPHEAELRNNDKFHYRYR 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,915
Number of Sequences: 5004
Number of extensions: 29591
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)