Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P20
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    27   3.4  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    27   3.4  
Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical ...    26   7.8  

>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
           protein C09E7.8b protein.
          Length = 1080

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 292 VFKDNNLILRCFLYKNRNQRY 354
           +FKD  L+LR  LYK  NQ Y
Sbjct: 256 LFKDTKLVLRGELYKAMNQAY 276


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
           protein C09E7.8a protein.
          Length = 1114

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 292 VFKDNNLILRCFLYKNRNQRY 354
           +FKD  L+LR  LYK  NQ Y
Sbjct: 290 LFKDTKLVLRGELYKAMNQAY 310


>Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical
           protein W06G6.3 protein.
          Length = 318

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 204 ISAVQQNTLHKYTSYLTAYIL*SFPNPNLHPFIF 103
           +S +QQN +    SY+  Y +  + +P+L  F+F
Sbjct: 92  LSLLQQNLVWMICSYVFRYYILKYKDPSLIAFLF 125


>AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical
           protein K03H6.4 protein.
          Length = 315

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 140 HRIYAVRYDVYLCKVFCC 193
           HR   ++Y VYLC VF C
Sbjct: 121 HR-QTIKYSVYLCSVFLC 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,411,499
Number of Sequences: 27780
Number of extensions: 160010
Number of successful extensions: 237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)