Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P19
         (330 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   1.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   5.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   7.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   7.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   7.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   7.7  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 224 KSFLNDSSFHFCRQSPWPPSFSLHSYCTLGIGHYN 328
           K + +   + +   SP P S  +HS+ T+G  +YN
Sbjct: 386 KMYADMHQYGYNTLSPLPSS--VHSHSTIGNDYYN 418


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 239 DSSFHFCRQSP 271
           DSS HF R+SP
Sbjct: 2   DSSDHFDRESP 12


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 117 HILYSYSNHMIGCV 76
           H L   + H+IGCV
Sbjct: 785 HWLQKATEHVIGCV 798


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 117 HILYSYSNHMIGCV 76
           H L   + H+IGCV
Sbjct: 785 HWLQKATEHVIGCV 798


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 117 HILYSYSNHMIGCV 76
           H L   + H+IGCV
Sbjct: 785 HWLQKATEHVIGCV 798


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 117 HILYSYSNHMIGCV 76
           H L   + H+IGCV
Sbjct: 785 HWLQKATEHVIGCV 798


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,954
Number of Sequences: 336
Number of extensions: 893
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6367260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)