Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P19
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336...    31   0.17 
12_01_0030 + 262452-263210,263332-263575,263867-264165                 29   0.89 

>08_01_0378 +
           3360215-3360253,3360326-3360437,3362176-3362213,
           3363949-3363966,3364629-3364847,3364937-3366727,
           3367764-3367827,3367915-3367975,3368685-3368694
          Length = 783

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 84  LSYDLNMNKVYENVHYCCSERL 149
           LSY LN++  + N H+CC  RL
Sbjct: 620 LSYSLNIHHCFSNSHFCCQGRL 641


>12_01_0030 + 262452-263210,263332-263575,263867-264165
          Length = 433

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 224 KSFLNDSSFHFCRQSPWPPSFSLHSYCTL 310
           +S L +    +CRQ PW P + L   C L
Sbjct: 237 RSNLEELLLKYCRQHPWEPRYKLDVICGL 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,180,910
Number of Sequences: 37544
Number of extensions: 76352
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)