Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P19
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71186-2|CAA94915.1|  203|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear fa...    26   5.5  
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    26   5.5  
U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear fa...    26   5.5  
Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical pr...    26   7.3  

>Z71186-2|CAA94915.1|  203|Caenorhabditis elegans Hypothetical
           protein F23D12.3 protein.
          Length = 203

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 183 PNIKLMSDFYI*GAPSNNNVHFHILYSYSNHMIGCVTINV 64
           P+ K  + FY+ G    ++V+ + L  Y+N + G   +NV
Sbjct: 114 PDPKDYNKFYVNGVDMESDVYTNFLAMYANALEGYAVLNV 153


>U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform b protein.
          Length = 787

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 317 QFLTCNRNVKKN*GAMGT 264
           +FL CN+ + KN GA+G+
Sbjct: 501 EFLNCNQEMNKNEGALGS 518


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 317 QFLTCNRNVKKN*GAMGT 264
           +FL CN+ + KN GA+G+
Sbjct: 521 EFLNCNQEMNKNEGALGS 538


>U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform c protein.
          Length = 823

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 317 QFLTCNRNVKKN*GAMGT 264
           +FL CN+ + KN GA+G+
Sbjct: 537 EFLNCNQEMNKNEGALGS 554


>Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical
           protein K06B4.1 protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 111 VYENVHYCCSERLRC 155
           V EN+HYCC +  +C
Sbjct: 33  VVENLHYCCQKFNKC 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,653,103
Number of Sequences: 27780
Number of extensions: 77971
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)