Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P18
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 97 8e-22
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 70 1e-13
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 68 6e-13
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 58 4e-10
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 56 2e-09
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 55 3e-09
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 51 7e-08
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 47 1e-06
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 43 2e-05
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 38 4e-04
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 36 0.002
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 35 0.004
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 34 0.007
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 31 0.083
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 30 0.11
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 30 0.15
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.19
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 28 0.44
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 28 0.59
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 27 1.4
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 26 1.8
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 3.1
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 25 4.1
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 25 5.5
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 24 9.6
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 24 9.6
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 24 9.6
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 97.1 bits (231), Expect = 8e-22
Identities = 45/57 (78%), Positives = 52/57 (91%)
Frame = +1
Query: 217 REDEYDYLFKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
+EDEYDYLFK VLIGDSGVGKS+LL RFTRNEF++ES+STIGVEFATR+I +D K I
Sbjct: 3 QEDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKI 59
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 69.7 bits (163), Expect = 1e-13
Identities = 32/54 (59%), Positives = 42/54 (77%)
Frame = +1
Query: 226 EYDYLFKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
EYDYLFK++LIGDSGVGKS LL RF + ++ STIGV+F R+ E++GKT+
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTV 57
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 67.7 bits (158), Expect = 6e-13
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = +1
Query: 229 YDYLFKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
YDYL K++LIGDSGVGKS LL RF+ + F+ +TIG++F R+IE+DGK I
Sbjct: 6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRI 58
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 58.4 bits (135), Expect = 4e-10
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +1
Query: 220 EDEYDYLFKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEV 372
++ YDYL K+VL G SG GKS LL RF +N++ + T+G++FA+R I V
Sbjct: 3 KESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISV 53
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 56.0 bits (129), Expect = 2e-09
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
KVV++GDSGVGK+ L+++F +FS E ++TIG +F T+ + VD K +
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLV 57
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 55.2 bits (127), Expect = 3e-09
Identities = 20/51 (39%), Positives = 39/51 (76%)
Frame = +1
Query: 235 YLFKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
+L KV+++G+SGVGK+S+++++ +FS + ++TIG +F T+ + VD K +
Sbjct: 7 HLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVV 57
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 50.8 bits (116), Expect = 7e-08
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKT 384
K+VL+GDS VGKSSL+ RF +++F STIG F T+++ +D T
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENT 62
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 46.8 bits (106), Expect = 1e-06
Identities = 17/49 (34%), Positives = 37/49 (75%)
Frame = +1
Query: 241 FKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
FK+V +G+ VGK+SL++RF ++F ++TIG++F ++++ ++ +T+
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTV 60
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 42.7 bits (96), Expect = 2e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEV 372
KV +IGDS +GK+SL+ + + F ES T+GV F ++I +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISI 54
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 38.3 bits (85), Expect = 4e-04
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 241 FKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVE 348
FK+VL+GD G GK++ + R EF + +T+GVE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVE 45
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 36.3 bits (80), Expect = 0.002
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
K+V++GD GK+SLLS FT F E T+ + + VDGK++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVS-DCRVDGKSV 56
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 35.1 bits (77), Expect = 0.004
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
K+V++GD GK+SLL+ FT+ F TI E I VDG +I
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTI-FENYIHDIFVDGNSI 61
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.3 bits (75), Expect = 0.007
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +1
Query: 241 FKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGK 381
+K+V++GD GVGKS+L + ++ F E TI + + E+DG+
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSY-RKKCEIDGE 54
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 30.7 bits (66), Expect = 0.083
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFA 354
K V++GD VGK+ LL +T N+F + T+ +A
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYA 41
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 30.3 bits (65), Expect = 0.11
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
K+V++GD GK+ LL F++ F T+ E +EVDG+ I
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV-FENYVADVEVDGRHI 54
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 29.9 bits (64), Expect = 0.15
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
K+V++GD GK+ LL F++ F T+ E +EVDG+ +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV-FENYVADVEVDGRHV 54
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 29.5 bits (63), Expect = 0.19
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNE 312
+VV+ GD GVGKSSL+S + +
Sbjct: 5 RVVICGDQGVGKSSLISALIQED 27
Score = 25.0 bits (52), Expect = 4.1
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 226 EYDY-LFKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTI--GVEF 351
+YD +F ++G GK++LLS F N + + +T+ VEF
Sbjct: 416 KYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTVVNSVEF 460
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 28.3 bits (60), Expect = 0.44
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 247 VVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDG 378
VV+ G SGVGKS+LL R ++ S R+ E DG
Sbjct: 21 VVVFGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDG 64
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 0.59
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 205 KMGTREDEYDYL----FKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEV 372
K G + + +D L +V IG VGKS+LLS T+ + + S + +E
Sbjct: 47 KSGPKGEGFDVLKSGDARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEY 106
Query: 373 DGKTI 387
DG I
Sbjct: 107 DGAEI 111
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNEF 315
K+V++GD G GK+ LL F+ F
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTF 39
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 26.2 bits (55), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 244 KVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGK 381
++ ++G VGKSSL ++ N F TI F +++I+ G+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQ 52
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 241 FKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEF 351
F V+++G+SG GKS+L++ + ++ ++ +F
Sbjct: 96 FNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDF 132
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 347 STPIVDL--DSKLNSFLVKRERRLLFPTPESP 258
ST + DL D +++ FL+ RE+ PT + P
Sbjct: 219 STGMADLSKDDRISRFLILREQSKQIPTQQKP 250
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 24.6 bits (51), Expect = 5.5
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 238 LFKVVLIGDSGVGKSSL---LSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
++KV+L+G S GKS++ + +N FS E T + R++ KT+
Sbjct: 34 IYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTF-IPVIRRNLLESAKTL 85
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 220 EDEYDYLFKVVLIGDSGVGKSSL 288
E +YD KVV I SG KSSL
Sbjct: 292 ETDYDENSKVVSIPHSGPSKSSL 314
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 247 VVLIGDSGVGKSSLLSRFTRNEF 315
+V+IG GKSS+L +EF
Sbjct: 266 IVVIGSQSSGKSSVLEAIVGHEF 288
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 250 VLIGDSGVGKSSLLSRFTR 306
VLIG+ GVGK+S+ R
Sbjct: 206 VLIGEPGVGKTSIAEGLAR 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,326
Number of Sequences: 5004
Number of extensions: 25546
Number of successful extensions: 119
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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