Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P18
         (388 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            52   1e-08
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    26   0.55 
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    23   3.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    22   6.8  
AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative 5-oxoprol...    22   6.8  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    22   6.8  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 51.6 bits (118), Expect = 1e-08
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +1

Query: 241 FKVVLIGDSGVGKSSLLSRFTRNEFSLESRSTIGVEFATRSIEVDGKTI 387
           FK+VL+G+S VGKSSL+ RF + +F     STIG  F T+++ +D  T+
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTV 73


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 244 KVVLIGDSGVGKSSLLSRFTRNEF 315
           K V++GD  VGK+ +L  +T + F
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSF 31


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -3

Query: 383 VLPSTSILLVANSTPIVDLDSKLNSFLVKRERRLL 279
           +L    +L++  + P+V  D  LN F +  +   L
Sbjct: 495 LLAGQPLLIIGTTGPLVLFDEALNQFCISNDFNFL 529


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 250 VLIGDSGVGKSSLLSRFT 303
           +L+G +G GKS++L+  T
Sbjct: 111 LLVGKNGSGKSAILAAMT 128


>AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative
           5-oxoprolinase protein.
          Length = 1344

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = -2

Query: 249 NFEQIIVFVLSCAHFELSKPL*STSESVKYKTSREILS 136
           + EQ+ +  +  A+  + +P+ + +++  Y TSR +L+
Sbjct: 464 SLEQVAMGFVRVANEAMCRPIRALTQARGYDTSRHVLA 501


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 197 LNLFNRRQNRSNIKRQEK 144
           L+  NR   R+NI++QE+
Sbjct: 853 LSAVNRTDTRANIRKQER 870


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 341,726
Number of Sequences: 2352
Number of extensions: 5334
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29929410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)